Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0846 ATGTCGTCTCTTAGTAGGGAATTGGTGTTCTTGATTTTACAGTTTCTTGAAGAGGAAAAGTTTAAAGAGACTGTTCACAAGCTTGAACAAGAGTCTGGATTTTACTTTAATATGAAGTATTTTGAGGATGAAGTACAAAATGGCAATTGGGATGAGGTTGAAAGATATCTCTCTGGGTTCACAAAAGTTGATGATAATCGGTATTCAATGAAGATATTTTTTGAGATCAGGAAGCAAAAGTACCTTGAAGCATTAGATAAGCACGATAGGTCCAAGGCTGTAGAAATATTGGTGAAGGATTTAAAAGTTTTTTCCACATTCAATGAAGACCTGTTCAAGGAAATTACACAGCTCTTGACATTGGAGAATTTCAGGGAAAATGAACAATTGTCAAAGTACGGGGATACAAAGTCTGCAAGGGCAATCATGTTGATTGAACTCAAAAAGCTGATTGAAGCAAATCCTTTATTCCGTGACAAATTGCAGTTTCCCAACCTTAAAAACTCAAGATTACGAACTCTCATCAACCAAAGCTTGAATTGGCAGCATCAACTCTGTAAGAATCCCAGGCCAAATCCAGATATTAAAACTCTTTTTGTGGATCACTCATGTGGTCAGCCAAATGGTGCACGGGCTCCATCACCAGCTAATAATCCGCTACTTGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCCCTAGGTGCACATGGGCCATTTCAACCTACGACAGCACCAGTGCCAGCACCCCTGGCAGGCTGGATGTCAAATCCTACCACTGTAGCCCATGCTGCAGTTTCTGGAGGAGCAGCTATAGGTCTTGGGGCTCCTTCAATCTCTGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAACCCGTCTGTTGACTACCCATCTGGAGATTCTGACCACGTCTCTAAGAGACCAAGGCCGATGGGAATGCCAGATGAGGTGAATCTACCTGTTAATGTGCTGCCAGCTGCATTACCAGGTCATGGGCATGGCCAATCTTTCAGTGCACCTGATGACTTACCAAAGACTGTTACACGAACTCTGAATCAGGGTTCATCTCCAATGAGCATGGACTTTCATCCAGTTCAACAAAGTTTACTTCTTGTTGGTACCAATATGGGGGACATTTCTATGTGGGAAGTGGGCTCCCGTGAGAAATTGGTCTCAAGGAACTTTAAAGTTTGGGATCTAAGTGCCTGTTCAATGCCACTTCAGGCTGCTCTTGTCAAAGATCCCAGTGTTTCTGTCAACCGTGTAATTTGGAGTCCTGATGGCGCTTTATTTGGAGTTGCTTACTCAAGGCATATTGTTCAGATATACTCATACCATGGAGGGGATGAAGTGCGCCAACACCTGGAGATTGATGCTCATGTTGGCGGAGTGAACGATCTTGCATTTTCCCACCCAAATAAGCAATTGTGTGTCATTACTTGTGGTGATGATAAGACCATTAAGGTTTGGGACGCTGCTACTGGTACAAAACAGTTTACTTTTGAAGGTCACGAAGCTCCAGTGTATTCTGTTTGTCCGCATTACAAAGAAAACATTCAGTTTATATTTTCTACGGCATTAGATGGAAAAATAAAGGCATGGTTGTATGACAATTTGGGCTCTCGTGTTGATTATGATGCTCCTGGTCGTTGGTGCACAACCATGGCTTACAGCGCTGATGGAACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCAATTGTTGAATGGAATGAAAGTGAAGGAGCTGTCAGAAGGACATATCAAGGATTTCGTAAAAGATCATTGGGTGTTGTGCAATTTGATACGACAAAAAACCGATTTTTGGCTGCTGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAACGTTCAACTTTTGACAACTATTGATGCTGATGGAGGTCTACCTGCAAGCCCACGTATCCGTTTCAACAAGGATGGAACCCTCTTAGCTGTTTCCGCAAATGAGAATGGAATTAAAATTTTAGCTAATGCAGATGGAATCAGATTGTTACGAACATTAGAGAATTCTGCATACGAGGCATCAAGAACATCTGAAGCCATAAAGCCCACGTTAAATCCAATTTCAGCTGCTGCTGCAAGTAGTGCTGCACTTGCAGAGAGGGGCTCATCTGTAGTAGCTATTGCCGGAATGAATGGGGATGCTCGGAATATGGGTGATATTAAACCTAGAATAGCTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAGAATCTGAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCCATACTGGCATTATCATCAGATGCAATTCATCTGCTCTGGAAATGGCAGAGAAGTGACCGAAATTCTTCTGGCAAGGCTACTGCCAGTGTCTCACCACACTTGTGGCAACCATCAAGTGGTATCCTGATGACCAATGACATATCTGACGGCAATCCTGAAGATGTTGTGCCTTGCTTTGCTCTCTCCAAAAATGATTCTTATGTGATGTCAGCATCAGGAGGGAAGATTTCGCTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCGCCACCCGCAGCAACCTTTCTTGCTTTCCACCCTCAGGATAACAATATTATAGCTATTGGGATGGATGATTCCACCATTCAGATATATAATGTCCGTGTGGATGAGGTTAAAAGTAAACTTAAAGGTCACACCAAAAGAATAACTGGCCTTGCTTTTTCTCATGCACTGAATGTGTTAGTGTCATCTGGCGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAGCAGAAGAGTAAATTCTTGCAGATTCCTTCGGGGAGAACTCCAACGGCACAGGCAGAAACCCGCGTACAGTTTCATCAGGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATATATGAAACAACAAAACTAGAATGTCTGAAGCAGTGGTTTCCAAGAGACTCTACTGCACCAATATCAGCTGCAACTTTCTCATGTGATAGCCAGCTGATATATGCCAGCTTTTTAGATGCAACAGTTTATGTCTTCAGTGCATCAAACCTCAGATTGCGTTGTCGTATCAATCCTTCTTCTTATCTTCCTGCTGGTGTCAGTTCCAATGTACAACCACTTGTGGTCGCAGCACATCCACAAGAACCAAATCAGTTTGCTTTAGGATTGTCAGATGGAGGAGTCTATGTGTTTGAGCCCCTTGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCCATTGAGAATGGATCAGCAAGTAATGCGGTTGTTACTTCAGTAGGAGTTTCTTCAGATCAAGCCCAGAGATAA 3393 0.4291 MSSLSRELVFLILQFLEEEKFKETVHKLEQESGFYFNMKYFEDEVQNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLIELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTTAPVPAPLAGWMSNPTTVAHAAVSGGAAIGLGAPSISAALKHPRTPPTNPSVDYPSGDSDHVSKRPRPMGMPDEVNLPVNVLPAALPGHGHGQSFSAPDDLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNMGDISMWEVGSREKLVSRNFKVWDLSACSMPLQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGTKQFTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVRRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTIDADGGLPASPRIRFNKDGTLLAVSANENGIKILANADGIRLLRTLENSAYEASRTSEAIKPTLNPISAAAASSAALAERGSSVVAIAGMNGDARNMGDIKPRIAEESNDKSKIWKLTEINEPSQCRSLKLPENLRVTKISRLIYTNSGNAILALSSDAIHLLWKWQRSDRNSSGKATASVSPHLWQPSSGILMTNDISDGNPEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHTKRITGLAFSHALNVLVSSGADAQLCVWNTDGWEKQKSKFLQIPSGRTPTAQAETRVQFHQDQIHFLVVHETQLAIYETTKLECLKQWFPRDSTAPISAATFSCDSQLIYASFLDATVYVFSASNLRLRCRINPSSYLPAGVSSNVQPLVVAAHPQEPNQFALGLSDGGVYVFEPLESEGKWGVPPPIENGSASNAVVTSVGVSSDQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0846 1130 FunFam Topless-related protein 3 736 970 - -
Mibi04g0846 1130 Gene3D - 517 692 IPR015943 GO:0005515
Mibi04g0846 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mibi04g0846 1130 Pfam WD domain, G-beta repeat 916 949 IPR001680 GO:0005515
Mibi04g0846 1130 Pfam WD domain, G-beta repeat 457 491 IPR001680 GO:0005515
Mibi04g0846 1130 Gene3D - 736 968 IPR015943 GO:0005515
Mibi04g0846 1130 MobiDBLite consensus disorder prediction 280 312 - -
Mibi04g0846 1130 Gene3D - 324 516 IPR015943 GO:0005515
Mibi04g0846 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 917 949 - -
Mibi04g0846 1130 SMART Lish 4 36 IPR006594 GO:0005515
Mibi04g0846 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 478 492 IPR019775 -
Mibi04g0846 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 633 IPR001680 GO:0005515
Mibi04g0846 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 472 1046 IPR011047 -
Mibi04g0846 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1112 IPR027728 GO:0006355
Mibi04g0846 1130 FunFam Topless-related protein 1 324 542 - -
Mibi04g0846 1130 MobiDBLite consensus disorder prediction 1104 1130 - -
Mibi04g0846 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 500 IPR001680 GO:0005515
Mibi04g0846 1130 SUPERFAMILY WD40 repeat-like 346 534 IPR036322 GO:0005515
Mibi04g0846 1130 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 975 1126 IPR011044 -
Mibi04g0846 1130 MobiDBLite consensus disorder prediction 1112 1130 - -
Mibi04g0846 1130 SMART WD40_4 822 864 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 910 949 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 450 491 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 584 624 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 538 581 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 494 535 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 1001 1042 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 867 907 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 405 444 IPR001680 GO:0005515
Mibi04g0846 1130 SMART WD40_4 344 383 IPR001680 GO:0005515
Mibi04g0846 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mibi04g0846 1130 Gene3D - 971 1129 IPR015943 GO:0005515
Mibi04g0846 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 917 958 IPR001680 GO:0005515
Mibi04g0846 1130 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0846 Mibi-ChrMibi04 17265208 17273896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0846 455 668 Miscellaneous Gene Families AT5G08390 24.312 1.09e-06 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0846 04 17265208 17273896 Mibi04g0846 04 17265208 17273896 ECH