Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0729 ATGGCTTTCTCCCTTCAAATTGAGAATGAATTTGTTCAGAACTCAGAGAGAGTGAAGTCTGTTGATCTGCATCCAACTGAACCATGGGTTCTAGTTGGTTTGTATTCAGGAACCATTTCCATTTGGAATTACCATACCAAGACTGAAGAAAAGTCTTTCAAGATCAGTGAATCACCAGTGAGATCAGCCAAGTTCATTGCTCGTCAAAACTGGATTGTTGCTGCAACCGACGACAAATTTATCCGCGTGTACGATTACAAAAACACAGAGAAGGTGACAGAATTTGAGGCTCATAAGGATTACATAAGGAGTTTGGCTATACATCCTACTCTGCCATATGTGATATCAGCTTCTGATGATCAAGTTCTTAAGGTTTGGGATTGGACTAATGGTTGGTCAAGCATTCAGAACTTTGAAGGTCACTCTCATTATGTGATGCAAGTTGCATTAAACCCAAATGACGAATCTTCCTTTGCAAGTGCTTCCCTTGATGGAACTTTGAAGATTTGGAATCTAAATTCTTCAACTCCAAAATATACCTTGGAAGGACATCTGAAAGGGGTAAATTGTGTTGAGTATTTCACAAGCAGTGACAAACAACTTTTGTTGAGTGGTTCTGATGATTACACAGCTAAGGTTTGGGATTATCACACTGAAAATGTTGTACAAACATTAGAAGGACATAAAAACAATGTTACATCAGTCTGCACTCATCCTGAGCTTCCTGTAATAATCACAGCTTCAGAGGATAACACTGTTAAAATGTGGAATTCTGTCACTTTCAGGCTTGAAACTACATTGAACTTTGATCTAGAGAGGGTATGGAGTATTGGATACAAGAAAGGATCACACCAGCTTGCTTTTGGTTGTGACAAAGGATTCATCATAGTGAAGATTGATTGCTCTTCTCAAAACCTTCATGCTTCCAAACAAGACTAG 939 0.3876 MAFSLQIENEFVQNSERVKSVDLHPTEPWVLVGLYSGTISIWNYHTKTEEKSFKISESPVRSAKFIARQNWIVAATDDKFIRVYDYKNTEKVTEFEAHKDYIRSLAIHPTLPYVISASDDQVLKVWDWTNGWSSIQNFEGHSHYVMQVALNPNDESSFASASLDGTLKIWNLNSSTPKYTLEGHLKGVNCVEYFTSSDKQLLLSGSDDYTAKVWDYHTENVVQTLEGHKNNVTSVCTHPELPVIITASEDNTVKMWNSVTFRLETTLNFDLERVWSIGYKKGSHQLAFGCDKGFIIVKIDCSSQNLHASKQD 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0729 312 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Mibi04g0729 312 Pfam WD domain, G-beta repeat 220 257 IPR001680 GO:0005515
Mibi04g0729 312 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Mibi04g0729 312 Pfam WD domain, G-beta repeat 16 43 IPR001680 GO:0005515
Mibi04g0729 312 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 257 IPR001680 GO:0005515
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 257 - -
Mibi04g0729 312 FunFam Coatomer alpha subunit, putative 11 300 - -
Mibi04g0729 312 CDD WD40 17 297 - -
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 174 - -
Mibi04g0729 312 PANTHER COATOMER 6 302 - -
Mibi04g0729 312 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Mibi04g0729 312 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Mibi04g0729 312 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
Mibi04g0729 312 SMART WD40_4 131 171 IPR001680 GO:0005515
Mibi04g0729 312 SMART WD40_4 4 43 IPR001680 GO:0005515
Mibi04g0729 312 SMART WD40_4 218 257 IPR001680 GO:0005515
Mibi04g0729 312 SMART WD40_4 88 127 IPR001680 GO:0005515
Mibi04g0729 312 SMART WD40_4 174 215 IPR001680 GO:0005515
Mibi04g0729 312 SMART WD40_4 46 85 IPR001680 GO:0005515
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Mibi04g0729 312 Gene3D - 10 300 IPR015943 GO:0005515
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 215 - -
Mibi04g0729 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Mibi04g0729 312 SUPERFAMILY WD40 repeat-like 4 296 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0729 Mibi-ChrMibi04 14731568 14734282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0729 50 263 Miscellaneous Gene Families AT5G08390 26.364 6.32e-19 85.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1205 11 29492261 29501898 Mibi04g0729 04 14731568 14734282 CCT
Mibi04g0729 04 14731568 14734282 Mibi04g0729 04 14731568 14734282 ECH