Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0374 ATGCCAAAAGAATTCATGGGTTCTTCTTTGATGGAGAGATCTTCATTTGCTTCATCATCAAAATTGCTCCTTGGCCATAGTTTTCAGCAGAAGCAGTTATTGATGAGCCCTTTCGCCGTTCCTTTTGAGAAGAATAGAAGACAAGTGAGGTTGAGTAGAAAGGCTTTGAACAACAAAACCGTGGCGGCTGTCAGTGAGGATTTGGTCAAGTCCTCTTCTTCTACTTCTTCATCTTCCTCCTCTGTTGCTTCTGAGAAAGCAGTGACATTTAAGGTTAGAGCTGTAGTTACTGTTAGAAACAAGATCAAAGAGGATTTTAAGGAGACCCTCGTCAAGCATTTTGATGCCTTCACTGATAAAATTGGCAGAAATGTTGTTTTGGAACTTGTCAGTACTGATATTGACCCAAAAACGAAAGCCCCAAAGAAGAGCAATGAAGCTGTGCTAAAAGACTGGTCAAAGAAGATGAATGTGAAAGCAGAGAGAGTTAATTACACAGCAGAGTTCATGGTGGATTCAGATTTTGGAGAACCAGGAGCTATTACAGTGACGAACAGACACCAACAAGAGTTCTTCATGGAAAGCATAACCATAGAAGGATTTGCTTGTGGTCCTGTTCATTTCCCCTGCAATTCCTGGGTTCAACCCAGGAAAGATCTTCCTGGAAAGAGGATATTCTTTTCCAACAAGCCATATCTACCCCATGAGACACCAGCTGGATTAAGAGTACTGAGAGAGAAGGAACTGAGGAATCTAAGAGGTGACGGCTCAGGTGTTAGGAAATTATCAGACAGAATTTATGACTTTGCCACCTACAATGATCTGGGCAATCCTGATAAGGGCATAGACCTCTCCAGACCAGCTCTAGGTGGTTCACAAAAATACCCCTACCCGAGACGATGTCGTACAGGCCGCCTCCCTTCAGACACAAATATGAATGCGGAGAGCCGGGTGGAGAAGCCGTTACCGATGTATGTTCCGAGAGATGAGAGATTTGAGGAGTCAAAGCAGAACACATTCACAGTTAAGAGGTTGAAGGCAGTGCTACATAACTTGATCCCAGGGTTGAAGGCTAGCCTCTCAGTTAACAACAATGACTTAAATGAATTCTCAGACGTTGATGGATTGTATAGTGAAGGTCTCCTCATCAAATTGGGTTTGCAAGATGAAGTTCTCAACAAAGTCCCTTTGATCCGTAAGATCCATGAATCTAGTCAGGGCCTCCTTAAGTATGACACCCCCAAGATTATTTCCAAGGACAAGTTTGCTTGGCTGCGAGATGACGAATTTGCCCGTCAAGCTATAGCAGGAATCAACCCTGTCAATATTGAAAAGCTTAAGACTTTCCCACCTGTGAGCAAGCTTGACCCTCAAATTTATGGCCCTCAAGAATCTGCCCTCAGAGAAGAACACATTCTGGGTCAACTTAATGGCATGACTGTTCAACAGGCAATAGATGAAGATAAGTTGTTCATTATAGACTACCATGATATCTATCTCCCGTTTCTTGATGGGATCAATGCTCTTGATGGTAGAAAATCCTATGCTACCCGAACCATCTTCTTTTTGACACCTATGGGCACTCTCAAGCCTGTTGCTATAGAGCTAAGTCTCCCACCAGCTGGACCAAGTTCCCGATCAAAACGAGTGGTCACACCCCCGGTTGATGCGACCACCAATTGGATGTGGCAGCTTGCTAAGGCCCATGTCTGTTCCAATGACGCTGGTGTGCATCAACTTGTTAACCATTGGCTACGGACACATGCGTGCACGGAGCCATTTATATTGGCAGCACACAGGCAATTAAGTGCGATGCATCCAATATTCAAGCTATTGGATCCTCATATGAGGTACACACTTGAGATCAATGCCTTGGCCCGTCAAAGTCTAATCAATGCTGATGGAATCATTGAGTCTTGCTTCACTCCCGGTCGCTACTGCATGGAAATCAGCTCCTCTGCCTACAAAAACTTCTGGCGCTTCGACATGGAGACCCTCCCTGCCGATCTCATTCGCAGGGGAATGGCAGTTCCTGATCCAACTCAACCTCACGGTCTGAGGCTGCTCATAGAAGACTACCCTTATGCAGCTGATGGACTCATGATCTGGTCTGCCATGCAGAACTGGGTTCGAACCTATGTGAACCATTACTACCCTGACCCAAACCTTGTGGCCCAAGACAAGGAGCTTCAAGCTTGGTACTTTGAGTCCATCAATGTAGGTCATGCTGACCTAAAAAATGAATCATGGTGGCCACCATTGAACACAAGTGACGACCTTGTCTCCATCCTCACAACCTTGATTTGGAATGCCTCTGCACAACATGCCGCCCTTAATTTTGGGCAGTACCCTTATGGAGGGTACGTGCCCAATCGCCCTCCATTGATGAGAAGGTTAATCCCCGACGAGAGTGACCCTGAATATGCTAGTTTTCTAGCAGATCCTCAAAGATATTTCCTCAATGCCATGCCTAGCTTGTTACAAGCTACCAAATATATGGCTGTGGTTGATACTCTATCTACTCATTCGCCGGATGAGGAGTACCTCGGGGAGAGACAGCAACCATCTACTTGGACTGGGGACACCGAGATGGTGGAGGCGTTCTACGGGTTTTCAGCTAAGGTTATGCAGATAGAGAAGGAGATTGACAAGAGGAATTGTGATAGGACACTGAGGAACAGATGTGGTGCTGGAGTTTTACCTTATGAATTGCTTGCTCCTAGCTCAGAACCTGGTGTTACATGTAGAGGTGTTCCAAATAGTGTCTCTACATGA 2775 0.4544 MPKEFMGSSLMERSSFASSSKLLLGHSFQQKQLLMSPFAVPFEKNRRQVRLSRKALNNKTVAAVSEDLVKSSSSTSSSSSSVASEKAVTFKVRAVVTVRNKIKEDFKETLVKHFDAFTDKIGRNVVLELVSTDIDPKTKAPKKSNEAVLKDWSKKMNVKAERVNYTAEFMVDSDFGEPGAITVTNRHQQEFFMESITIEGFACGPVHFPCNSWVQPRKDLPGKRIFFSNKPYLPHETPAGLRVLREKELRNLRGDGSGVRKLSDRIYDFATYNDLGNPDKGIDLSRPALGGSQKYPYPRRCRTGRLPSDTNMNAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSVNNNDLNEFSDVDGLYSEGLLIKLGLQDEVLNKVPLIRKIHESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGINPVNIEKLKTFPPVSKLDPQIYGPQESALREEHILGQLNGMTVQQAIDEDKLFIIDYHDIYLPFLDGINALDGRKSYATRTIFFLTPMGTLKPVAIELSLPPAGPSSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACTEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIESCFTPGRYCMEISSSAYKNFWRFDMETLPADLIRRGMAVPDPTQPHGLRLLIEDYPYAADGLMIWSAMQNWVRTYVNHYYPDPNLVAQDKELQAWYFESINVGHADLKNESWWPPLNTSDDLVSILTTLIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPDESDPEYASFLADPQRYFLNAMPSLLQATKYMAVVDTLSTHSPDEEYLGERQQPSTWTGDTEMVEAFYGFSAKVMQIEKEIDKRNCDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0374 924 ProSitePatterns Lipoxygenases iron-binding region signature 2. 605 615 IPR020834 GO:0016702|GO:0046872
Mibi04g0374 924 PRINTS Lipoxygenase signature 578 595 IPR013819 GO:0016702|GO:0046872
Mibi04g0374 924 PRINTS Lipoxygenase signature 560 577 IPR013819 GO:0016702|GO:0046872
Mibi04g0374 924 PRINTS Lipoxygenase signature 598 618 IPR013819 GO:0016702|GO:0046872
Mibi04g0374 924 FunFam Lipoxygenase 557 923 - -
Mibi04g0374 924 Gene3D PLAT/LH2 domain 74 232 - -
Mibi04g0374 924 SMART LH2_4 90 229 IPR001024 GO:0005515
Mibi04g0374 924 CDD PLAT_LH2 90 229 IPR042057 -
Mibi04g0374 924 MobiDBLite consensus disorder prediction 283 312 - -
Mibi04g0374 924 FunFam Lipoxygenase 72 232 - -
Mibi04g0374 924 ProSiteProfiles PLAT domain profile. 106 228 IPR001024 GO:0005515
Mibi04g0374 924 Pfam Lipoxygenase 240 907 IPR013819 GO:0016702|GO:0046872
Mibi04g0374 924 Gene3D - 422 555 - -
Mibi04g0374 924 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 231 924 IPR013819 GO:0016702|GO:0046872
Mibi04g0374 924 FunFam Lipoxygenase 233 335 - -
Mibi04g0374 924 ProSitePatterns Lipoxygenases iron-binding region signature 1. 578 592 IPR020833 GO:0016702|GO:0046872
Mibi04g0374 924 SUPERFAMILY Lipoxigenase 233 923 IPR036226 -
Mibi04g0374 924 FunFam Lipoxygenase 423 555 - -
Mibi04g0374 924 Gene3D - 336 421 IPR027433 -
Mibi04g0374 924 Gene3D - 233 335 - -
Mibi04g0374 924 Pfam PLAT/LH2 domain 148 227 IPR001024 GO:0005515
Mibi04g0374 924 Gene3D - 557 923 - -
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 409 425 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 296 315 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 448 467 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 224 245 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 836 850 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 263 279 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 515 539 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 198 216 IPR001246 GO:0016491
Mibi04g0374 924 PRINTS Plant lipoxygenase signature 364 385 IPR001246 GO:0016491
Mibi04g0374 924 PANTHER LIPOXYGENASE 91 923 IPR000907 GO:0016702|GO:0034440|GO:0046872
Mibi04g0374 924 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 90 232 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0374 Mibi-ChrMibi04 6409822 6415885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0374 1 923 Acyl Lipid Metabolism Gene Families AT1G17420 72.961 0.0 1421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0374 04 6409822 6415885 Mibi04g0374 04 6409822 6415885 ECH