Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi02g2146 | ATGCTCTACTCCACCTCTTTCCATGGCTTTATCAGAACCACCACTTCTGCTTCAGCCACCATATCCCTCAGGGGTCCCCTTTTCCTCTTACCTCACAAAAGACTCTCACTTTTCTCCATTTCCTTCAGACACCCTTCCATTGGATTGAGGAACTTTCATGCTCCCTCCAAGATATGGCCTCACATAGGGGCTTTGGGCTCTGCGTCGCATTTGGGTACTCCTGTGGTGAATCATAAGGAGAGGCAAATTGTGGGTTTCCGGCGGAGGAGTATTGCTTTGCCCTTTTTGCATCAGCACAGCTCTAGCTTTGGCCGTTTTGCTTATGAGGATGTGTCTAGTGATGATTCCGATGTGGAATTTGGGCATCCTCAGCAACAAATGGGTGGTTCTTCCCTCGATAACATTGATGAGTGGAGATGGAAGTTAACCATGCTTCTTCGCAACAAAGACGAGCGAGAATTGATTTCAAGGGAGAAAAAGGACAGACGTGATTTTGAGCATCTCTCAGCTTTAGCATCTAGGATGGGTTTATATAGCCGACAATATGCAAGAGTAGTTGTCTTTAGCAAGGAACGTCTGCCAAATTACAGATCTGATCTGGATAATAAGCGTCCACAGAGGGAGGTCGTCATACCTTCTCGTGTTCTCGGAGGAGTAAATTCACTTCTCAATGCTCATCTTTCTAAAAAGTCTACGAGCTCTGGAGGTGTTTTTGATACACCCTTGCATAGATCAAGCAGTGCTGGCATTCCTGCAGATGAAGGAATTCTCTATGATCCAGAGCCCTTGGCACAGAATAGTGCTGTTAGGGAGAGAATCCTTCGACCAAAAAGTTTGCAACTGCGTCATAAACAAGAAGATTGGCAGGAGTTACCTGAAGGACAGAAGATGCTTGAATTTCGTAGAACTCTTCCCGCTTTCAAGGCAAAAGATGCATTGTTGAAAGCCATTTCAGAGAACCAGGTTATTGTGGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCACAGTATGTACTAGAGTCTGAGATTGAAGCTGCACGTGGTGCTGTCTGTAGTATAATTTGTACTCAGCCTAGAAGAATATCTGCGATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAAAAATTGGGAGAATCTGTTGGTTACAAGGTTCGGCTGGAGGGTATGAAAGGAAGGGATACTCGTCTTCTTTTTTGCACAACAGGTGTATTGTTGAGGAGACTACTTGTGGACAGAAATCTAAAAGGTGTGACTCATGTGGTTGTTGACGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTCCTTGTTGTCCTGAAGGATCTTCTTCCACGCCGTCCTGACCTTAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCCTACTTTGGGGGCGCCCCAACTTTACATATACCTGGTTTTACATATCCAGTTCAAACACATTTTCTTGAGGATATTCTGGAAATGACACGATATCGGTTGACACCCTATAATCAAATTGATGATTATGGTCAAGAGAAGACATGGAAGATGCAGAAACAGGTTCAAGCTTTGAAAAAAAGAAAGACCCAGGTTGCTTCTGCTGTTGAGGATGCACTTGAAGCTGCTGATTTCAAGGAGTACAGCTTATGCACACGGGAATCATTATCCTGCTGGACTCCTGATTCAATTGGTTTTAACCTTATTGAACACGTTCTTTGCCACATTGTCAAGAATGAAAGGCAAGGTGCTATTTTGGTTTTTATGACTGGTTGGGATGACATAAATTCTTTAAAAGATCAGCTCCAAGCTCATCCTCTGTTGGGCGATCCAAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGCTGATATTTGAAAATCCTGAAGGAGGAGTGAGGAAAGTAGTTCTTGCCACTAATATGGCTGAGACCAGTATTACCATCAATGATGTTGTCTTTGTGATTGATTGTGGGAAAGCAAAAGAGACATCTTATGATGCACTAAACAACACTCCTTGTTTACTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGTCGTGTTCAACCTGGTGAATGTTATCATCTTTATCCTAGATGTGTTTATGACACTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTACAGTCCCTATGTCTTCAAATTAAAAGTCTAAACCTTGGAAGTATTTCAGAATTCCTATCAAGAGCTCTGCAACCACCAGAGCCTTTATCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGGGCCTTGGACGAAGATGAAAATCTGACAGTTTTAGGTCGTAACTTGTCAATGCTCCCTGTAGAGCCTAAACTTGGAAAGATGCTTATCTTAGGAGCTATCTTCAAATGTTTAGATCCCATAATGACTGTTGCTGCTGGTCTTAGCGTCAGAGATCCATTTTTGATGCCATTTGACAAGAAGGATCTTGCAGAATCTGCCAAGGCCCAGTTTGCTGCTGGTGCCTATAGTGATCATCTTGCACTTGTTCGGGCTTATGATGGTTGGAGCAATGCAGAAATACAGAAAGCAGGTTATGAGTACTGTTGGAGAAATTTCCTTTCTTCACAGACACTTAGAGCCATTGAATCTCTTCGGAGGCAATTTTTTTACTTGCTCAAAGATATTGGCGTGGTTGATCATAATACTGACAATTGCAATGCATGGAGTCATGATGAGCATCTGGTCCGAGCAGTCATTTCAGCTGGTCTATTTCCTGGAGTATGCTCTGTTGTGAACAAAGAAAAGTCAATAGCATTGAAAACAATGGAGGATGGTCAAGTTCTTCTGTATGCTAACTCTGTAAATGCTAGTGTACCCAAAATTCCATTCCCATGGGTGGTATTCAATGAAAAGGTGAAGGTGAATTCAGTATTCCTTCGTGATTCAACTGGTATATCTGATTCAATGCTTCTCTTATTTGGTGGGAGTGTTTCTAGAGGCGGACTGGACGGTCACCTGAAAATGCTGGGAGGATATTTGGAATTTTTCATGAATCCTGCATTAGCTGAGACTTACTTAAGCCTGAAGAAGGAGCTGGAGGAATTAATACATAGAAAACTTCTGGATCCCAAGTTAGATATACATTCATCGGAAGAGCTTCTTTCAGCCGTGAGATTGCTGGTATCAGAGGACCAGTGTGGGGGGAAATTTGTCTTTGGCCGTCAAGTGCTATCGCCATCAAATAAGGCAAAAGACTCCAAATATATTTCCATTGAGGGTAGTAATTATAAAAACCAGCTGCAATCATTGCTTGCCAAGGCTAGACATGAACTGCCGATTTACAAAACAAAACAATTGAAAAACAACCAGTTCCGCTCTACTGTCATATTCAATGGCTTGAATTTTGTTGGCCAGCCTTGCAACAGCAAGAAACAAGCAGAACAGGACGCTGCTTCTGAGGCTCTTCTGTGGTTAATGGGGGATAAACATTCATCTAGTGATGATATCGGTGAGATGCAATCATTGCTTGGCAGGGCTCGACATAAACCATCAAATAAGGTATCAAAGAAGGGAGAAGATTCCAAAGGTAGTTCGGTTGAGAGTGGTGATTGTAAAGGCCAGCTGCAAACATTTCTTGTCAGGGCTGGACATGAATCACCAACTTACAAAACAAAACAAGTGGGGAACAACCAATTCCGCTCTACCATCATAGTCAATGGCTTGAATTTTGCCGGCCACCCTTGCAACAGCAAGAAACAAGCAGAAAGGAATGCTGCTGCTGAGGCTCTTCTATGGCTAAAGGGTGATACACGTTCACATCATGATGTTGATGATGATGATGATGTTGACGATATGCCTTTTCCTTTCAAAAAGAGCAACAAAAGAAGCAAAATTTCACTGAATGGTGCTAAAAGAAGATGA | 3945 | 0.4269 | MLYSTSFHGFIRTTTSASATISLRGPLFLLPHKRLSLFSISFRHPSIGLRNFHAPSKIWPHIGALGSASHLGTPVVNHKERQIVGFRRRSIALPFLHQHSSSFGRFAYEDVSSDDSDVEFGHPQQQMGGSSLDNIDEWRWKLTMLLRNKDERELISREKKDRRDFEHLSALASRMGLYSRQYARVVVFSKERLPNYRSDLDNKRPQREVVIPSRVLGGVNSLLNAHLSKKSTSSGGVFDTPLHRSSSAGIPADEGILYDPEPLAQNSAVRERILRPKSLQLRHKQEDWQELPEGQKMLEFRRTLPAFKAKDALLKAISENQVIVVSGETGCGKTTQLPQYVLESEIEAARGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVVVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTLHIPGFTYPVQTHFLEDILEMTRYRLTPYNQIDDYGQEKTWKMQKQVQALKKRKTQVASAVEDALEAADFKEYSLCTRESLSCWTPDSIGFNLIEHVLCHIVKNERQGAILVFMTGWDDINSLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKVVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEDENLTVLGRNLSMLPVEPKLGKMLILGAIFKCLDPIMTVAAGLSVRDPFLMPFDKKDLAESAKAQFAAGAYSDHLALVRAYDGWSNAEIQKAGYEYCWRNFLSSQTLRAIESLRRQFFYLLKDIGVVDHNTDNCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLYANSVNASVPKIPFPWVVFNEKVKVNSVFLRDSTGISDSMLLLFGGSVSRGGLDGHLKMLGGYLEFFMNPALAETYLSLKKELEELIHRKLLDPKLDIHSSEELLSAVRLLVSEDQCGGKFVFGRQVLSPSNKAKDSKYISIEGSNYKNQLQSLLAKARHELPIYKTKQLKNNQFRSTVIFNGLNFVGQPCNSKKQAEQDAASEALLWLMGDKHSSSDDIGEMQSLLGRARHKPSNKVSKKGEDSKGSSVESGDCKGQLQTFLVRAGHESPTYKTKQVGNNQFRSTIIVNGLNFAGHPCNSKKQAERNAAAEALLWLKGDTRSHHDVDDDDDVDDMPFPFKKSNKRSKISLNGAKRR | 1314 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi02g2146 | 1314 | Gene3D | - | 746 | 849 | - | - | |
| Mibi02g2146 | 1314 | SMART | DRBM_3 | 1212 | 1275 | IPR014720 | - | |
| Mibi02g2146 | 1314 | SMART | DRBM_3 | 1104 | 1167 | IPR014720 | - | |
| Mibi02g2146 | 1314 | SMART | helicmild6 | 598 | 704 | IPR001650 | - | |
| Mibi02g2146 | 1314 | SUPERFAMILY | dsRNA-binding domain-like | 1210 | 1277 | - | - | |
| Mibi02g2146 | 1314 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 314 | 481 | IPR014001 | - | |
| Mibi02g2146 | 1314 | SUPERFAMILY | dsRNA-binding domain-like | 1101 | 1174 | - | - | |
| Mibi02g2146 | 1314 | FunFam | DExH-box ATP-dependent RNA helicase DExH3 | 259 | 482 | - | - | |
| Mibi02g2146 | 1314 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 304 | 883 | IPR027417 | - | |
| Mibi02g2146 | 1314 | Gene3D | - | 1083 | 1171 | - | - | |
| Mibi02g2146 | 1314 | Gene3D | - | 1193 | 1279 | - | - | |
| Mibi02g2146 | 1314 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1211 | 1276 | IPR014720 | - | |
| Mibi02g2146 | 1314 | MobiDBLite | consensus disorder prediction | 1185 | 1211 | - | - | |
| Mibi02g2146 | 1314 | CDD | DEXHc_RHA-like | 320 | 480 | - | - | |
| Mibi02g2146 | 1314 | Pfam | Helicase conserved C-terminal domain | 572 | 703 | IPR001650 | - | |
| Mibi02g2146 | 1314 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 570 | 744 | IPR001650 | - | |
| Mibi02g2146 | 1314 | FunFam | DExH-box ATP-dependent RNA helicase DExH3 | 566 | 722 | - | - | |
| Mibi02g2146 | 1314 | PANTHER | ATP-DEPENDENT RNA HELICASE | 254 | 1041 | - | - | |
| Mibi02g2146 | 1314 | FunFam | Putative ATP-dependent RNA helicase DHX36 | 746 | 850 | - | - | |
| Mibi02g2146 | 1314 | SMART | ultradead3 | 302 | 495 | IPR014001 | - | |
| Mibi02g2146 | 1314 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 923 | 1004 | IPR011709 | - | |
| Mibi02g2146 | 1314 | CDD | SF2_C_RHA | 485 | 712 | - | - | |
| Mibi02g2146 | 1314 | Pfam | DEAD/DEAH box helicase | 312 | 465 | IPR011545 | GO:0003676|GO:0005524 | |
| Mibi02g2146 | 1314 | Pfam | Double-stranded RNA binding motif | 1213 | 1274 | IPR014720 | - | |
| Mibi02g2146 | 1314 | Pfam | Double-stranded RNA binding motif | 1104 | 1166 | IPR014720 | - | |
| Mibi02g2146 | 1314 | Gene3D | - | 565 | 722 | IPR027417 | - | |
| Mibi02g2146 | 1314 | Gene3D | - | 263 | 482 | IPR027417 | - | |
| Mibi02g2146 | 1314 | MobiDBLite | consensus disorder prediction | 1276 | 1314 | - | - | |
| Mibi02g2146 | 1314 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 1103 | 1168 | IPR014720 | - | |
| Mibi02g2146 | 1314 | Pfam | Helicase associated domain (HA2) | 767 | 840 | IPR007502 | GO:0004386 | |
| Mibi02g2146 | 1314 | MobiDBLite | consensus disorder prediction | 1276 | 1299 | - | - | |
| Mibi02g2146 | 1314 | SMART | ha2_5 | 766 | 857 | IPR007502 | GO:0004386 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi02g2146 | Mibi-ChrMibi02 | 23932469 | 23950660 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mibi02g2146 | 02 | 23932469 | 23950660 | Mibi02g2146 | 02 | 23932469 | 23950660 | ECH |