Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1539 ATGGAGGAGGAGGCTGACATATACGACGGTGTAAGGGCTCAATTCCCTCTTAGTTTCGGAAAGCAATCAAAGTCTCAAACCCCTCTCGAAGCCATCCACAACGCCACTCGTCGTTCCACTTCCAATCTCACCTCTAATCCTCCTCCTCCTCCTTCTTCGAATCCCTCCACCAATGGCCTCCCTTCTATGTCTTCCTCTTCCAAGTCCTGGCTTCTCTCCCTCCGCAATTCCAAAAACCCTAACTCTGATACTGGAGGTGTTTCCGACATTGGACCCCCTCGACCACCTGAGGAAGACGTGGATGATGACACCATCATTGGGCCTCCTCCACCTGAGGGTTTAGGTTCCCTTGAAGAAGAAGCAGATGACGATGGGGAGTTGATTGGCCCGCCAAGACCTCCCATGAATTTGGATGAAAGTGCTGAGGATGATTCAGATGAAGATGAGTTGGGCAATCGGTTTCGAATTCCGCTCAGCAACGAGATTGTTCTCAAGGGCCACACTAAGGTTGTGTCTGCTCTTGCTGTGGATCACACTGGGTCTAGAGTACTTTCTGGAAGTTATGACTACACTGTGCGTATGTATGACTTCCAAGGAATGAATTCGCGGTTGGAATCATTTCGGCAGTTGGAGCCGTTTGAAGGACATCAAGTTCGCAATCTAAGCTGGAGTCCTAGTGCGGATCGCTTTCTGTGTGTGACAGGATCAGCTCAAGCAAAGATCTACGATCGAGATGGGCTTACTTTAGGAGAGTTTGTGAAGGGGGACATGTATATACGTGATCTGAAAAATACTAAAGGCCACATAACTGGATTGACTTGGGGAGAATGGCATCCAAAAACCAAGGAAACAATCTTAACATCATCAGAGGATGGATCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGAAGGTAAATGCATCACTGGTGGTATAGGAGATGGTTCTATACAGATTTGGGGTATTAAGCCTGGATGGGGGAGTAGGCCAGACATATTTATTGATAAAGCACATTCTGATGATATTACTAGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGCTTTGATTGTTCATTGAAGGTCTGGGATTTGCGCAAAACAAAGGAACCTCTAAAGGTATTTGAAGATCTTCCTAATAATTACGGGCAAACAAATATCGCTTTTAGCCCTGACGAACAGCTTTTTTTAACCGGAACATCCATTGAAAGAGAGAGTTCAAGTGGAGGTTTATTGTGCTTTTATGATCGCACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTGCAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGTGACAAAAGCCAAGGAGGAACTCACATACTATATGACCCAACCCTCAGTGAGAAAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCGATTGAGGATTTTGAGGCCAAGCCTGTTGTTCACAATCCTCATGCCTTACCACTATTCAGAGATCAGCCAAGCCGTAAACGTCAGCGAGAGAAAATACTGAAGGATCCAATGAAGTCCCATAAGCCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGGCGAGTGGGTGTAAGTCAAGGAAGCCTGCTGACTCAATATCTTCTGAAGCAAGGTGGTATGATTAAGGAGACGTGGATGGAGGAAGATCCTAGAGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAATGATCCAAAATTCATTGCTCCAGCATACGCAAAAACCCAGCCTGAGCCTGTTTTTCAAGCTTCAGATTCTGATGAGGAAGAGAAACAATAG 1911 0.4542 MEEEADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSTSNLTSNPPPPPSSNPSTNGLPSMSSSSKSWLLSLRNSKNPNSDTGGVSDIGPPRPPEEDVDDDTIIGPPPPEGLGSLEEEADDDGELIGPPRPPMNLDESAEDDSDEDELGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLESFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHITGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDREGKCITGGIGDGSIQIWGIKPGWGSRPDIFIDKAHSDDITSLKFSSDGRVLLSRSFDCSLKVWDLRKTKEPLKVFEDLPNNYGQTNIAFSPDEQLFLTGTSIERESSSGGLLCFYDRTNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKSQGGTHILYDPTLSEKGALVCVARAPRKKSIEDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPMKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAANDPKFIAPAYAKTQPEPVFQASDSDEEEKQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1539 636 Pfam WD domain, G-beta repeat 361 392 IPR001680 GO:0005515
Mibi02g1539 636 Pfam WD domain, G-beta repeat 162 196 IPR001680 GO:0005515
Mibi02g1539 636 Pfam WD domain, G-beta repeat 263 298 IPR001680 GO:0005515
Mibi02g1539 636 MobiDBLite consensus disorder prediction 57 86 - -
Mibi02g1539 636 MobiDBLite consensus disorder prediction 615 636 - -
Mibi02g1539 636 FunFam Nucleotide binding protein 107 252 - -
Mibi02g1539 636 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Mibi02g1539 636 MobiDBLite consensus disorder prediction 18 43 - -
Mibi02g1539 636 CDD WD40 163 482 - -
Mibi02g1539 636 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 7 635 - -
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Mibi02g1539 636 MobiDBLite consensus disorder prediction 1 150 - -
Mibi02g1539 636 Gene3D - 158 255 IPR015943 GO:0005515
Mibi02g1539 636 FunFam WD repeat-containing protein 70 253 495 - -
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 394 - -
Mibi02g1539 636 SMART WD40_4 157 196 IPR001680 GO:0005515
Mibi02g1539 636 SMART WD40_4 302 346 IPR001680 GO:0005515
Mibi02g1539 636 SMART WD40_4 206 243 IPR001680 GO:0005515
Mibi02g1539 636 SMART WD40_4 353 392 IPR001680 GO:0005515
Mibi02g1539 636 SMART WD40_4 255 298 IPR001680 GO:0005515
Mibi02g1539 636 SMART WD40_4 396 444 IPR001680 GO:0005515
Mibi02g1539 636 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Mibi02g1539 636 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Mibi02g1539 636 PRINTS G protein beta WD-40 repeat signature 183 197 IPR020472 -
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 198 - -
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 401 IPR001680 GO:0005515
Mibi02g1539 636 SUPERFAMILY WD40 repeat-like 143 480 IPR036322 GO:0005515
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 307 IPR001680 GO:0005515
Mibi02g1539 636 Gene3D - 256 494 IPR015943 GO:0005515
Mibi02g1539 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1539 Mibi-ChrMibi02 15318756 15321839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1539 285 465 Miscellaneous Gene Families AT5G08390 23.626 2.05e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1539 02 15318756 15321839 Mibi02g1539 02 15318756 15321839 ECH