Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1534 ATGGGCTTCGCCGCCGCCGCCGCCGCAATCGTGGTGGCCGTTGCCAGCAAGGAGTGGTGGTGGAATTGTAGGGAGGGTGTGATTGATGATTGGATTTAGGTGGGTGCCAATGCTCATTGGCTATTGAAACAACAGCGAGCGCCTAGGGTTTTTCTGGGGGATTTTCTTGATTCATTGAACAATAATTTCGACATTTTGGGGTCAGAGGATTTTGTTCTCCCTTCCGAATTCCCAATCTCACGGTCGTTTCAGTATTCAGAGTTAGGTTTATTGTCTGTTGTTTTATCATGTGTTCGAGCCTATCTTTATTTCTTGAGATTGGCTTGTTCTTTTGAGAGTTTGGGAAGTCCAAAGTCTCAGGTTTTCCTGTTAAGCATTTTATTAATGGAGAATTCATCTGATGTTCTTGGCTCAAAAGGCTTGATTAAAAAAGTTGAGTTTGTGAGGATAATCATTCAGTGCCTATATGCACTAGGGTATAGCAAGTCTGCATCATTCTTGGAATCGGAATCTGGTACTTCATTCAAGTCTGCAGAATTTCAGTTGATTGAATCACAAATACTTAATGGGGATTGGGATGGTTGTATCAGCACTCTTAATTTACTGAAGGATATGATTGATGAATCTAGAGAATCCGCCCTGTTTCTTGTCTTCAGACAGTGTCTTCTGGAGTATTTGAGTTGTGGCCAAGATTCCTTAGCCTTGAATGTATTAAGGAAACAGGTCGCTACATTACATGTGGATAAATGCAAGGTTCACAGCCTAGCCAATTGCATGCTTTTGTTGAAGGATACAGAGTTAGGTTTAAAAGATGATACCGCTGTCCATGATTTGCGAAGAAAGTTGTTAATTGACTTGGAGAAATTGCTCCCACCTCCAATTACAGTTCCTGAAAGAAGGCTGGAGCATCTAGTAGAAGCTACTCTGACTGACTGGATTGATTCTTGTTTGTATCATAGTTCATCAAGTCCAATTTCACTTTATGAGGACCATAGTTGTAGTCGGGATCTCGTTCCTACTGAAACCATTCAGATCTTGACTGGGCATAAAAATGAAGTTTGGTTTGTGCAATTTTCTAATAATGGGGAGTACCTTGCCTCTTCATCTAATGATTGTTCTGCCATCATATGGAAGGTGCTGGAAGATGGGCAATTGACACTGAAACACATACTACAAGGTCACCTAAAACCAGTATCTTTTGTGGCATGGAGTCCTGATGACACTAAGTTGCTCACATGTGGGAATGCGGAAGTCTTAAAGCTGTGGGATATTGAAACAGGTACTTGCAAGCACACATTCGGGAGTCATGACTTCGTTGTGAGCTCATGTGCCTGGTTTCCCAACTCAGAGAATATTGTGTGTGGCAGCTCTGACCCCGAAAAGGGCATTTGCATGTGGGATTGTGATGGAAACGAGCTAAAATCTTGGAGAGGAGTTAGGATGCCCAAAGTTCTAGATCTTGCTGTTACATCAGATGGGGAGTACCTTATTACCATATTCATGGAAAAGGAGATCCGGATTTTGCACATGGGAACGAATACTGAGCGAGTCATTTCAGAGGAGCATCCGATCACATCCCTTTCAGTTTCAGGAGATGGCAAGTTCTTCATTGTGAATCTAAACAGCCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGACAAGCCATTGAGGTACCAGGGCCATAAGCAACACAAATATGTGATAAGGTCTTGCTTTGGTGGATTGAATAGCACATTCATTGCCAGTGGCAGCGAGAATGCACAGGTCTACATTTGGAACCGCAGGAACTCAAAGCCAATAGAGGTTTTATCTGGACACACAATGACTGTGAATTGTGTGAGCTGGAACCCTAGAAGACCACAAATGCTGGCATCTGCAAGTGATGATCAAACAATTCGTATATGGGGACCTAGCTTATAA 1926 0.4273 MGFAAAAAAIVVAVASKEWWWNCREGVIDDWIXVGANAHWLLKQQRAPRVFLGDFLDSLNNNFDILGSEDFVLPSEFPISRSFQYSELGLLSVVLSCVRAYLYFLRLACSFESLGSPKSQVFLLSILLMENSSDVLGSKGLIKKVEFVRIIIQCLYALGYSKSASFLESESGTSFKSAEFQLIESQILNGDWDGCISTLNLLKDMIDESRESALFLVFRQCLLEYLSCGQDSLALNVLRKQVATLHVDKCKVHSLANCMLLLKDTELGLKDDTAVHDLRRKLLIDLEKLLPPPITVPERRLEHLVEATLTDWIDSCLYHSSSSPISLYEDHSCSRDLVPTETIQILTGHKNEVWFVQFSNNGEYLASSSNDCSAIIWKVLEDGQLTLKHILQGHLKPVSFVAWSPDDTKLLTCGNAEVLKLWDIETGTCKHTFGSHDFVVSSCAWFPNSENIVCGSSDPEKGICMWDCDGNELKSWRGVRMPKVLDLAVTSDGEYLITIFMEKEIRILHMGTNTERVISEEHPITSLSVSGDGKFFIVNLNSQEIHMWDVDGKWDKPLRYQGHKQHKYVIRSCFGGLNSTFIASGSENAQVYIWNRRNSKPIEVLSGHTMTVNCVSWNPRRPQMLASASDDQTIRIWGPSL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 379 - -
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 427 - -
Mibi02g1534 641 SMART WD40_4 426 467 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 553 595 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 598 638 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 339 378 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 469 509 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 384 423 IPR001680 GO:0005515
Mibi02g1534 641 SMART WD40_4 511 549 IPR001680 GO:0005515
Mibi02g1534 641 FunFam WD repeat-containing protein 26 homolog 333 638 - -
Mibi02g1534 641 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 176 233 IPR006595 -
Mibi02g1534 641 PANTHER WD REPEAT PROTEIN 26-RELATED 130 639 - -
Mibi02g1534 641 Pfam WD domain, G-beta repeat 342 378 IPR001680 GO:0005515
Mibi02g1534 641 Pfam WD domain, G-beta repeat 600 637 IPR001680 GO:0005515
Mibi02g1534 641 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Mibi02g1534 641 Pfam WD domain, G-beta repeat 427 466 IPR001680 GO:0005515
Mibi02g1534 641 SMART ctlh 176 233 IPR006595 -
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 641 IPR001680 GO:0005515
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 379 IPR001680 GO:0005515
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 432 IPR001680 GO:0005515
Mibi02g1534 641 SUPERFAMILY WD40 repeat-like 336 637 IPR036322 GO:0005515
Mibi02g1534 641 CDD WD40 343 637 - -
Mibi02g1534 641 Gene3D - 336 640 IPR015943 GO:0005515
Mibi02g1534 641 ProSiteProfiles LIS1 homology (LisH) motif profile. 143 175 IPR006594 GO:0005515
Mibi02g1534 641 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 605 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1534 Mibi-ChrMibi02 15272117 15277704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1534 336 502 Miscellaneous Gene Families AT5G08390 29.341 4.51e-16 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1534 02 15272117 15277704 Mibi02g1534 02 15272117 15277704 ECH