Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1383 ATGGAAGCTGCAAAGAACTTGTTTAGTTCATCCCCGTTTCCATCAAGAACTATTCACCGAAGCGGTCTTCCCTCGTCTTCTTCTCTAGTTTTCACTTTTCATGAACAAGCCACTCCCGCAGTTACCTCTAGGTCTACTAGTTTTGCTGCCCAGCATTTTCCCACCTCGGTTCTTCTACAAGAGCAACGTGATGAGTGCAGACCTATACTGCGCATGCATAAGGAAGAAAAGACATCTCAGGCAACATTAAATACAAGGCAGATGGATATGGCCTCAGTTTGTGAAGCCAATGACCTTGGCAACGCTGATCAACTAGTGCATGACTTTAATCAGCAATTGCAAATTTGGCCTCGTTTACGGGACTTGTTGACTTCCTTACCAGCAGAGGAAATCGCAACATCATCAACTCTGCAGCTTGTCACCACTGACTTAGAGAACACTGCAGAAGTTGAAGAGCTTGATGCAGTTGTTCTTGCTAAGCAAGCATTGTCAGCCTCAAAACAAGCTGCGTCAATAGCTGCAGACTTAAAATCAATCAAAGCTGATGATGATGTTTTGCCTCCTCTTGGTTTGGCCTCCACAAGTTTGGATAATATTTCACTTGGAAAGAATAGAACTGTGAGGTCAACACGCCTTCTAGAGAGACAATCAAAGAAGAGAAAAAAATCAAAAGCAAAAGTCTTAGATGAAGATAGCTATCTTTCTAAAAAGGCTGAAGTAAAAGGAAGGTTAAATGTAGAGAAGAAGATAAATGAAGGTTTTGATCAAAATGATCCCCTGCGTTTGTTCCTATGGGGTCCTGAAACAAAGCAACTATTGACTCTTGAAGAAGAATCTCAATTGATTCTTCAGCTACAGGATTTATTGAGATTGGAAGGAGTAAAGAGAAGACTTCATTCACAATTTGGGCGGGAACCAACTTTGGCCGAGTGGGCTGATGGTGTGGGCCTCACCTGTCAAGCCCTGCAGTTACAGCTTTATTCTGGTAACAGCAGCAGAGACAAGCTAATTTATGCAAATTTAAGAATGGTAGTTCACATTGCTAAACATTATCTGGGGCGTGGTCTCAGTTTTCAGGACTTATTGCAGGAGGGAAGTATGGGGCTTATGAAGAGTGTTGAGAAGTTTAAACCCCGAAAAGGTTGTCGCTTTGGTACTTATGCCTACTGGTGGATAAGGCAAACAATTAGGAAGGCCATATTTCTACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGATATCAGAGACAAAGAAATTGTACATTCGAGAAGGAAATCTTCATCCAACCAAAGAAGAACTAGCAAGAAGGGTAGGAATTACAGTAGATAAGTTAACTAATCTGCTATACGTTGCAAGAATTCCAATTTCAATGCAAAAAACAGTGTGGACAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACGGCAGTTGAGATCCCAGATGTGAGTGTGGGAAAACAGATGATGAGGCGGCATGTGCGAAGCCTCTTAAGTACCTTGAGCCCAAAAGAAAGGAGGATAATACGGCTAAGATTTGGTATTGAGGACGGAAAACAGAAATCGTTATCGGAGATTGGAAACATGTTTGGTTTATCTAAGGAAAGGGTTCGACAGTTAGAGAGCCGGGCATTGTACAAGCTGAAGCAGTGCCTTGGCAGCCATGGCCTTGATGCATATTCAGAACTGCTTGTGTAG 1719 0.4258 MEAAKNLFSSSPFPSRTIHRSGLPSSSSLVFTFHEQATPAVTSRSTSFAAQHFPTSVLLQEQRDECRPILRMHKEEKTSQATLNTRQMDMASVCEANDLGNADQLVHDFNQQLQIWPRLRDLLTSLPAEEIATSSTLQLVTTDLENTAEVEELDAVVLAKQALSASKQAASIAADLKSIKADDDVLPPLGLASTSLDNISLGKNRTVRSTRLLERQSKKRKKSKAKVLDEDSYLSKKAEVKGRLNVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEESQLILQLQDLLRLEGVKRRLHSQFGREPTLAEWADGVGLTCQALQLQLYSGNSSRDKLIYANLRMVVHIAKHYLGRGLSFQDLLQEGSMGLMKSVEKFKPRKGCRFGTYAYWWIRQTIRKAIFLHSRTIRLPENVYTLLGKISETKKLYIREGNLHPTKEELARRVGITVDKLTNLLYVARIPISMQKTVWTDQDTTFQEVTADTAVEIPDVSVGKQMMRRHVRSLLSTLSPKERRIIRLRFGIEDGKQKSLSEIGNMFGLSKERVRQLESRALYKLKQCLGSHGLDAYSELLV 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1383 572 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 332 559 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 Gene3D - 491 571 IPR036388 -
Mibi02g1383 572 Pfam Sigma-70 region 3 416 486 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PRINTS Major sigma-70 factor signature 544 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PRINTS Major sigma-70 factor signature 360 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PRINTS Major sigma-70 factor signature 508 520 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PRINTS Major sigma-70 factor signature 529 544 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PRINTS Major sigma-70 factor signature 384 392 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 Gene3D RNA Polymerase Primary Sigma Factor 104 408 - -
Mibi02g1383 572 Pfam Sigma-70 region 2 337 400 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 Pfam Sigma-70, region 4 504 557 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 150 567 - -
Mibi02g1383 572 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 256 406 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 CDD Sigma70_r4 498 556 - -
Mibi02g1383 572 Gene3D - 409 486 IPR036388 -
Mibi02g1383 572 PIRSF Sigma_factor_SigC 2 572 IPR016262 -
Mibi02g1383 572 ProSitePatterns Sigma-70 factors family signature 1. 360 373 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mibi02g1383 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 409 482 IPR013324 -
Mibi02g1383 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 469 567 IPR013324 -
Mibi02g1383 572 ProSitePatterns Sigma-70 factors family signature 2. 529 555 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1383 Mibi-ChrMibi02 13791202 13795349 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2218 06 42642662 42655765 Mibi02g1383 02 13791202 13795349 CCT
Mibi02g1383 02 13791202 13795349 Mibi02g1383 02 13791202 13795349 ECH