LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi02g1316	ATGGATCGTTCTCGGAAACACCAGGTATCCTTGAGAGGAGCAAGCGCAAAGGAGATAACAAGGGATGCCCTTCTTGAGAAGGTTTCTCGGGAAAGAGAACTCCGCAATTATGCAAAACGGGCTACTGCTTCTGCTCTATTCATCCAGAGAGTATGGAGGCGCTACAAGGTTACAAGGTTGGTTGCTCGGCAACTCCAGCAGGAGTGGGAGACGTTGTTGAACCATTACACTGGTGTTACGACAGCAATATGGATTGCCAACAATTTGTTGCGACCATTTCTTTTCTTCATAAGCCGGTTCTCATCTGAGCATCAGGAGGCTTACAGCAAGAAAATAGACTCTATGAGGATTTGCTTTACAATCTTATTGGAGAGCCTGAACTCTTCTGATTCAAGGAGGAACTTCTGCTCTCTAGCAGTTGGTACACCTGAAGAAAGGAGAATTTGGGGTCACCAAGCTCGAGGGCTTATCTCTGTTGGCTTTGTCATTCTTTCAGAGTTAAGTAAAGGCATTTCAAGAAATCAAGATATGACCTTGGTTACCTCCCTTGCAATGCGTGTTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATTACTGATGACAATCGTCAGGATGCTGATATAGCAGTGAAAGGTTTGATTGAGTACATGGGGAGTAATGACAGTGGTAGTTATGTGTCTATTAGTGGATATATTAGTTCATTGGATAACTATTCTTCACAAACGAAGAATATAAACCAGACAGATGATAAGTTTGTAATTACTGCAAGTGCAATAACTTTGGCTTTGCGGCCATTCTATTTGAGAAGCTCTGATGTTAATGTTCCTGCTATGTTGGATGTGGACCATGCTGCTAGGCAGTATTGCACATTCATGCTGACAGTTCCTTGGCTTGTGAAGCGTCTGCCATCTGTTCTTCGACCTGCTATAAAGCACAATTCTGTTTTGTTTCCATGCTTTCTTGGTATACTGATCTTGAGAGAGAATATTTCAATGGAGATATCACATTTGATTCATTTAGACACTCTTATCTCCTGCAAGGAAATTCCAACAGTTGGTTGGGCTCTCACTAACATTATCTGCCTAGCAATGGGGAATGAAAATGAATCTGTGGATCCTCAATGCTTCCATCAGGGTCTAGACCATGCATTATATGTCCATGTTGTTAACTATCTTTCAGAAACCCTACTGTCTCATCTTTATAATGTTGGATGGATTAAAAAGGGGAAGAAAGCTATTCAGAATGATTCTGACGCCTCAGCAGAACCCATGGATACAGTTCTTTATGAGAATGAAGAAGCATATGATTCCTTTCTGATTTCCTACATAGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTTCAAAAACTTTTGGCTGCAGCAAACAAAGATGTCACCGACAGGGCTGAGATTCTGCTTCCAAATGGTCTGGAATGCTTGGGAAAGCTGGATTTGAGTGATATTGCTCTTTTTTATTCGAACGTGCTAAAAATATATGCAATCTTGAATCCAATTCGTGGCTCCTTGCCAGTTCTCAACATGCTATCCTTTACTCCTGGATTTCTTGTCAAGGTGTGGCACTTGTTGGAGGATTTCATTTTTCATGGAGACAATCACACTTCTGATTACCACATGAGTGGAAAAAGCAAACATGATGCATCTGAGAGCAGGCTAAAACATGTCAGTAAGGATGGGGCTAATAAGTGGGTCAGTGTTCTTCATAAATTAACTGGTAAGTCCCATGCTGCATCAAATAATGCTGAACACACCAGCAGTCATTCTGAGCCTAGCGAAATGAATGTGGATTCATCTGATGTATGGGACATAAAGCCTATGAGGCGTGGTCCACAAGGAATTTCTAAAGATACATTTGCTCTACTTCATATATTCTGTGCCACCTATTCTCACCTACTTTTAGTTCTTGATGACATAGAATTCTACGAGAAACAGGTTCCATTTAACTTAGAGAAGCAACAAAGAATTGCATCAATGCTCAATTCTCTGGTGTATAATGGCTTGTCCCATGGTATGAGTGAGCAGAGTAGACCCCTCATGGACTGTGCTATCAGATGCTTACATTTAATGTATGAAAGAAATTGTCGGCATCAATTTTGTCCTCCTGATTTGTGGCTTTCCCCTGCTAGAAAAAACCGGCCTCCTATTGCAGTGGCTGCCAGAACTCACGAAATTTCATCAGTCAATATAAGATATGATGATTCATTGACTTTTCCCAGTATGGGTTCTGTTATCACCACAACTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGAGAGTTCATTAAGATGGATAAAGCCTCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGGGCTATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAACTAAATTCCCTTGGGACAAGGTTGAAGTCATCCATCCACGTTTCTTTTGTGAGTGAATGTGGCCTTCCTGAGGCTGGCCTGGATTATGGTGGGCTATCTAAAGAATTTTTAACTGACATATCAAAAGCGGCCTTTGCCCCAGAGTATGGGCTATTTTCCCAAACCTCAACCTCCGACAGGCTTCTAATACCAAATTCTTCTGCAAGATTTTTGGATAATGGTCTTCTGATGATTGAGTTTCTTGGAAGAGTCGTTGGTAAAGCTCTTTATGAAGGAATATTACTTGATTACTCTTTCTCGCATGTTTTTGTACAAAAACTATTGGGGAGATATAGCTTTCTTGATGAGTTATCAACACTTGATCCCGAGCTGTACAGGAATCTTATGTATGTCAAGCATTATGATGGTGATGTCAATGAGCTCTCTCTTGATTTTACTGTTACTGAAGAATCATTTGGGAAATGGAATGTTATTGAGCTAAGGTCTGGTGGCAAAGATACCTTGGTGACAAATGAGAACAAAATGCAGTACATACATGCAATGGCAGACTACAAACTTAATCAACAGATATTGCCCTTCTCAAATGCATTCTATAGAGGATTGACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCAAGTGAATTTAATCAGTTGCTTTCAGGTGGAAAGTATGATATTGATGTCGATGATTTAAAAAATAACACACGATACACAGGTGGTTATAATGAAGGAAGCCGGACAATCAAGATATTTTGGGAGGTGATGAAAGACTTTGAACCCCAAGAACGTTGCATGCTTCTGAAATTTGTCACTAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATATTTACAGCCTACTTTTACTATCCACAAGGTTGCTGGTGATGTCCCTCTTTGGGCGACATTTGGAGGACAAGATGTTGAGCGGCTTCCTTCAGCTTCAACTTGCTACAATACCCTCAAGCTTCCAACCTACAAACGTGCAAGTACGTTGAGAACAAAGCTTCGATATGCTATCAATTCAAATGCCGGATTTGAACTCTCTTAA	3489	0.4079	MDRSRKHQVSLRGASAKEITRDALLEKVSRERELRNYAKRATASALFIQRVWRRYKVTRLVARQLQQEWETLLNHYTGVTTAIWIANNLLRPFLFFISRFSSEHQEAYSKKIDSMRICFTILLESLNSSDSRRNFCSLAVGTPEERRIWGHQARGLISVGFVILSELSKGISRNQDMTLVTSLAMRVLVMLTDLKGWKGITDDNRQDADIAVKGLIEYMGSNDSGSYVSISGYISSLDNYSSQTKNINQTDDKFVITASAITLALRPFYLRSSDVNVPAMLDVDHAARQYCTFMLTVPWLVKRLPSVLRPAIKHNSVLFPCFLGILILRENISMEISHLIHLDTLISCKEIPTVGWALTNIICLAMGNENESVDPQCFHQGLDHALYVHVVNYLSETLLSHLYNVGWIKKGKKAIQNDSDASAEPMDTVLYENEEAYDSFLISYIDQFRPVCQQWHLQKLLAAANKDVTDRAEILLPNGLECLGKLDLSDIALFYSNVLKIYAILNPIRGSLPVLNMLSFTPGFLVKVWHLLEDFIFHGDNHTSDYHMSGKSKHDASESRLKHVSKDGANKWVSVLHKLTGKSHAASNNAEHTSSHSEPSEMNVDSSDVWDIKPMRRGPQGISKDTFALLHIFCATYSHLLLVLDDIEFYEKQVPFNLEKQQRIASMLNSLVYNGLSHGMSEQSRPLMDCAIRCLHLMYERNCRHQFCPPDLWLSPARKNRPPIAVAARTHEISSVNIRYDDSLTFPSMGSVITTTPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGTRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPNSSARFLDNGLLMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVNELSLDFTVTEESFGKWNVIELRSGGKDTLVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGKYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVMKDFEPQERCMLLKFVTSCSRAPLLGFKYLQPTFTIHKVAGDVPLWATFGGQDVERLPSASTCYNTLKLPTYKRASTLRTKLRYAINSNAGFELS	1162

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi02g1316	1162	ProSiteProfiles	HECT domain profile.	818	1162	IPR000569	GO:0004842
	Mibi02g1316	1162	MobiDBLite	consensus disorder prediction	583	604	-	-
	Mibi02g1316	1162	Gene3D	Hect, E3 ligase catalytic domains	796	1034	-	-
	Mibi02g1316	1162	FunFam	Putative Ubiquitin-protein ligase E3C	920	999	-	-
	Mibi02g1316	1162	SUPERFAMILY	Hect, E3 ligase catalytic domain	794	1155	IPR035983	GO:0004842
	Mibi02g1316	1162	FunFam	E3 ubiquitin-protein ligase UPL7	1037	1161	-	-
	Mibi02g1316	1162	MobiDBLite	consensus disorder prediction	583	605	-	-
	Mibi02g1316	1162	Pfam	HECT-domain (ubiquitin-transferase)	849	1162	IPR000569	GO:0004842
	Mibi02g1316	1162	Gene3D	Hect, E3 ligase catalytic domain	920	999	-	-
	Mibi02g1316	1162	SMART	hect_3	812	1162	IPR000569	GO:0004842
	Mibi02g1316	1162	Gene3D	Hect, E3 ligase catalytic domain	1037	1161	-	-
	Mibi02g1316	1162	PANTHER	UBIQUITIN-PROTEIN LIGASE E3C	6	1162	IPR044611	GO:0000209\|GO:0061630
	Mibi02g1316	1162	CDD	HECTc	794	1160	IPR000569	GO:0004842

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi02g1316	Mibi-ChrMibi02	13013715	13023386	Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi02g1316	02	13013715	13023386	Mibi02g1316	02	13013715	13023386	ECH