Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi02g1215 ATGGAAAACAGTGCAGGGAATGGGAAAGAAAAGGAATTGATAGGGGAAAATGGTTTCTTGAAAGTGGCACAACCTTCTATTCGTAGTAGTGGCTCTGGTGGGGGGGATACTGATCCAGTAAATAAGAGGGATGAGGGGAAAGATAATCTTTCGTACGCCAATATCCTACGTTCAAGGAACAAATTTGTTGATGCTCTTGTTCTATATGATCGCGTCATTGAGAATGATAGTGGGAATGTCGAGGCTTTAATTGGAAAAGGAATATGCCTACAAATGCAGAATATGGGAAGGCTTGCTTTTGACAGTTTTGCTGAGGCTATCAAGTTGGATCCTCAAAATGCTTGCGCACTTACTCATTGTGGCATTTTGTACAAAGAAGAAGGTCGTTTGATGGAGGCAGCTGAGTCGTATCAGAAGGCTTTACAAGCAGACCCTTCATACAAAGCAGCTTCTGAATGCCTCGCCATTGTTTTAACAGATATTGGTACCAACATTAAGCTTGCAGGAAACACTCAAGAGGGAATTCAAAAATATTATGGTGCTCTCAAAATAGATCCTCACTATGCTCCCGCATATTATAACCTTGGTGTCGTCTATTCTGAAATGATGCAATATGACATGGCCCTTAGTTTCTATGAGAAGGCTGCATCAGAGAGGCCAATGTATGCGGAGGCATATTGCAATATGGGTGTGATTTACAAGAATCGTGGTGATTTAGAGGCAGCTATTGCTTGCTATGAGAGGTGCTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCCTTGACTGATTTGGGGACCAAGGTTAAATTGGAAGGGGACATCAATCAAGGCGTGGCTTATTATAAGAAAGCCTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTCGGGGTTGCTTATGGTGAGATGCTTAAGTTTGACATGGCTATTGTATTTTATGAACTTGCTTTTCACTTCAATCCTCATTGTGCGGAAGCATGTAACAATCTCGGGGTTATATATAAAGATAAAGACAACCTTGATAAAGCTGTAGAGTGTTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAATCATTGAATAATCTTGGTGTTGTCTACACTGTCCAGGGTAAAATTGATGCTGCTGCAAGTATGATAGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAATTTAGGAGTTCTTTATAGGGATATCGGTGATATCACTCTGGCAGTGAATGCTTATGAGCAATGTCTTAAGATAGATCCGGACTCTCGAAATGCTGGCCAGAATCGATTGCTTGCAATGAATTACATAGATGAAGGCCATGATGATAAACTTTTTGAAGCCCACAGGGACTGGGGTAGGCGCTTCATGAGATTATATTCGCAGTACTCGACATGGGATAACTCTAAAGATCCTGATCGACCTCTTGTCATAGGATATGTATCTCCTGATTATTTTACCCATTCTGTGTCTTACTTCATTGAGGCTCCCCTTGTCTATCACGACTACACCAATTATAAAGTCATAGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACAATAAAATTTAGAGAGAAAGTTCTACAGAAGGGTGGGATTTGGAGAGATATATATGGGATTGAAGAAAAGAGAGTTGCCAACATGGTCAGAGAAGACCAGGTTGACATTCTGGTAGAACTCACCGGTCATACTGCAAATAACAAGTTGGGAATGATGGCATGTCGGCCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCTAATACAACCGGCTTACCTGCAATTGATTATAGAATAACTGATTCGCTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTCGATTACCAGAATGTTTCCTTTGTTATACACCTTCGCTTGAGGCTGGGCCTGTTTGTCCTACTCCTGCCCTTTCTAATGGTTTCGTTACGTTTGGTAGCTTTAACAATCTTGCTAAGATCACACCTAAAGTATTGCAAGTTTGGGCAAGGATATTACGTCAAGTTCCAAATTCACGCCTTGTGGTAAAATGTAAACCGTTTTGTTGTGATAGTGTAAGACAGAGATTTCTCACAACGTTGGAGCAATTAGGTGTGGAACCACTATGCGTTGATCTTCTACCCCTGATTCTTCTTAACCATGACCATATGCAAGCATATTCTCTGATGGATATCAGTTTGGACACATTTCCTTATGCTGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCATGCGTTACTATGGCTGGTTCTGTACACGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTCTGGAACGTTTGGTTGCCAGAAATGAAGATGAATATGTCCAATTGGCTCTGCAGCTGGCCTCCGACATACCAGCCCTGCAAAATTTGAGGATGAGTCTCCGAGAACTCATGTCCAAGTCTCCTCTTTGCGATGGAGTGAATTTTGCCCATGGCCTGGAATCTACATTTAGGAACATGTGGCGCAGATATTGTAAAGGAGACGTTCCATCTTTAAAGCGCATGGAATTGTTGCAGCAATCAGCAGTGACGAGTGACCCATCTAGTAAGACATCAGAACCAACAAGGATGGCCAACTCAAGAGAGAGTAGCCCTGGATCTGCCAAGGCTAGTGAATTAAATTCATCACAATCATCTAAACTCAATACCCGCAGTTGCGAAGAGAATGGGGGGTCATTGAATCACTCTAGTAAACAAGGGAAGGCGGGTTCTAGTTAA 2787 0.4155 MENSAGNGKEKELIGENGFLKVAQPSIRSSGSGGGDTDPVNKRDEGKDNLSYANILRSRNKFVDALVLYDRVIENDSGNVEALIGKGICLQMQNMGRLAFDSFAEAIKLDPQNACALTHCGILYKEEGRLMEAAESYQKALQADPSYKAASECLAIVLTDIGTNIKLAGNTQEGIQKYYGALKIDPHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDKDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKIDAAASMIEKAIIANPTYAEAYNNLGVLYRDIGDITLAVNAYEQCLKIDPDSRNAGQNRLLAMNYIDEGHDDKLFEAHRDWGRRFMRLYSQYSTWDNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIKFREKVLQKGGIWRDIYGIEEKRVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQVWARILRQVPNSRLVVKCKPFCCDSVRQRFLTTLEQLGVEPLCVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLERLVARNEDEYVQLALQLASDIPALQNLRMSLRELMSKSPLCDGVNFAHGLESTFRNMWRRYCKGDVPSLKRMELLQQSAVTSDPSSKTSEPTRMANSRESSPGSAKASELNSSQSSKLNTRSCEENGGSLNHSSKQGKAGSS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi02g1215 928 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 264 462 - -
Mibi02g1215 928 SMART sel1 400 431 IPR006597 -
Mibi02g1215 928 SMART sel1 189 220 IPR006597 -
Mibi02g1215 928 SMART sel1 223 254 IPR006597 -
Mibi02g1215 928 SMART sel1 332 363 IPR006597 -
Mibi02g1215 928 SMART sel1 298 329 IPR006597 -
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 366 399 IPR019734 GO:0005515
Mibi02g1215 928 Pfam Glycosyl transferase family 41 653 834 IPR029489 -
Mibi02g1215 928 Pfam Glycosyl transferase family 41 475 636 IPR029489 -
Mibi02g1215 928 Gene3D Tetratricopeptide repeat domain 275 462 IPR011990 GO:0005515
Mibi02g1215 928 MobiDBLite consensus disorder prediction 863 928 - -
Mibi02g1215 928 SUPERFAMILY TPR-like 263 435 IPR011990 GO:0005515
Mibi02g1215 928 SMART tpr_5 366 399 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 400 433 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 114 147 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 223 256 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 264 297 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 298 331 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 80 113 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 189 222 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 155 188 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 332 365 IPR019734 GO:0005515
Mibi02g1215 928 SMART tpr_5 46 79 IPR019734 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat region circular profile. 400 432 - -
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Mibi02g1215 928 Gene3D Glycogen Phosphorylase B; 642 827 - -
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 332 365 IPR019734 GO:0005515
Mibi02g1215 928 SUPERFAMILY TPR-like 48 272 IPR011990 GO:0005515
Mibi02g1215 928 Gene3D - 471 641 - -
Mibi02g1215 928 Gene3D Tetratricopeptide repeat domain 155 274 IPR011990 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat region circular profile. 332 364 - -
Mibi02g1215 928 Pfam Tetratricopeptide repeat 223 256 IPR001440 GO:0005515
Mibi02g1215 928 Pfam Tetratricopeptide repeat 332 365 IPR001440 GO:0005515
Mibi02g1215 928 Pfam Tetratricopeptide repeat 189 220 IPR001440 GO:0005515
Mibi02g1215 928 Pfam Tetratricopeptide repeat 400 432 IPR001440 GO:0005515
Mibi02g1215 928 SUPERFAMILY TPR-like 345 799 IPR011990 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat region circular profile. 223 255 - -
Mibi02g1215 928 Pfam Tetratricopeptide repeat 368 393 - -
Mibi02g1215 928 Pfam Tetratricopeptide repeat 121 146 IPR019734 GO:0005515
Mibi02g1215 928 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 39 867 - -
Mibi02g1215 928 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Mibi02g1215 928 MobiDBLite consensus disorder prediction 24 46 - -
Mibi02g1215 928 Gene3D Tetratricopeptide repeat domain 42 154 IPR011990 GO:0005515
Mibi02g1215 928 ProSiteProfiles TPR repeat region circular profile. 189 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi02g1215 Mibi-ChrMibi02 11988359 11999028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi02g1215 208 907 Glycosyltransferase AT3G11540 63.314 0.0 890
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi02g1215 02 11988359 11999028 Mibi02g1215 02 11988359 11999028 ECH