Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g3254 ATGTCTCGGATATTCTCGAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCATCAGAGACTCAATTCGGTGTCTCTGTAAGAAGTGGTCATAATTGGACGAGGTTCAATTTTCGATTCAATCAGGTTTGTCCAATCTCGACTCACTTGAATTATTTTCCAATCGCCACACATAGACGAAGAGAATCGTTCATCAACGTTCAGGAGAGGTATAAATGGGACCATGGTGGCTCTGGCGAGAGCCGAAATCATCGGAATTCTCAAGCTCGAAAGATTCGAGCTGATGCTAATTGCCCAAGGTGTGCTAGGACCATGGATTTATTTTTCTCCAATCGCCATAATCCAAGTTCTAATTTTGATTCCAATTTGATTCCTCCTGTTCCTCTTCATGAAGGAGGAGGAGGTTATCAAACTATGAATCTCTGTCCCAATTGTAAAACAGCTTATTTCTTTCACCCTTTTGGGAATGCTCCTATCCAAGGTACATTTGTGGAGATTGGTAGGATCACAGATGATAAAGTTAGTTATACTAGCAATAGATTGCAGAAGAGGATATCCAATGGCAAAGTCAAAGATGACAGGGGAAGTATTAATAGTCATGGGAGTAACGGTTTAGTTGAAGATTATGCCCATAGAGGTGACAGTAATAATGGATTTAGAGAGTCATTCTGGCATAACTTAAAATCCTTTAGTGATGGAGATGGTGGAGAGCCACCGGAAACTTGGTCTCCCCCACCACCAGGTTCTTCTAATGGGAATGGGATTGCTGTGCATACCCCTCCAGGACCACCTTTTGCACCTGGTCTTAATGTTGTTCGGGCTTCAGGGCCGCGGGAGGGCGGTTCAAGTGGTGGAGGTGGCGGTAATGGGGAAAAGACAACATGGGGAGGGTCCAATTTGGGCAAGGATTTGCCCACACCAAAGGAGATCCGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCATCACAGAAAGGGTCAGGGGCAGATTCAACGAATCCAAAAACACTAGATGATGACGATAATGTGGAGCTAGACAAGAGTAATGTTCTCCTGATGGGTCCAACAGGTTCAGGGAAGACATTGCTGGCAAAAACTCTAGCTCGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTTAATGTTCAAGCAGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAACATTAGTCGGGATGTTTCTGGCGAGGGAGTTCAGCAGGCACTACTGAAAATGTTGGAAGGAACAATAGTAAATGTTCCTGAAAAAGGTGCAAGAAAGCATCCACGGGGCGATAACATACAGATTGATACAAAGGATATTCTTTTTATATGTGGTGGAGCATTCATTGATCTTGACAAAACAATATCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCTCCTGTTCGTGCAAACATGAGAACCAGTAAAGTAATAAATGTTGAAGTAACATCAGCATTACTGGAGTCGGTGGAAAGTTCTGATCTTATTGCATACGGTCTCATACCTGAGTTTATTGGACGGTTTCCAATCTTAGTTAGTTTATCCGCCTTAACACAAGATCAACTTGTGCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTGATTGGGATGAATAATGTTAAGCTTCATTTCACGGAGAAGGCACTGAGATTGATTGCACAGAAAGCAATGGCCAAGAACACTGGCGCCAGGGGTTTAAGAGCTATACTGGAAAGCATCCTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGACTGGAAATGATCGGATCGACGCTGTAGTCATCGATGATGAGTCAGTAGGATCAGTGGATGCCCCAGGATGTGGTGGAAAAATTCTTCGTGGACACGGTGCATTGGAGGATTTCCTTGCAAAGACGAAAGATTCAGTGGTCAATGGTGAGGTAACTGAATCAGATGTACAAGAGGGGGAAACAGAGAGAGCCATGAGCATGTAA 2163 0.43 MSRIFSRWKKVKEMAMISSSETQFGVSVRSGHNWTRFNFRFNQVCPISTHLNYFPIATHRRRESFINVQERYKWDHGGSGESRNHRNSQARKIRADANCPRCARTMDLFFSNRHNPSSNFDSNLIPPVPLHEGGGGYQTMNLCPNCKTAYFFHPFGNAPIQGTFVEIGRITDDKVSYTSNRLQKRISNGKVKDDRGSINSHGSNGLVEDYAHRGDSNNGFRESFWHNLKSFSDGDGGEPPETWSPPPPGSSNGNGIAVHTPPGPPFAPGLNVVRASGPREGGSSGGGGGNGEKTTWGGSNLGKDLPTPKEIRKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASSQKGSGADSTNPKTLDDDDNVELDKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLDKTISERRQDSSIGFGAPVRANMRTSKVINVEVTSALLESVESSDLIAYGLIPEFIGRFPILVSLSALTQDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFTEKALRLIAQKAMAKNTGARGLRAILESILTDAMFEIPDVKTGNDRIDAVVIDDESVGSVDAPGCGGKILRGHGALEDFLAKTKDSVVNGEVTESDVQEGETERAMSM 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g3254 720 Gene3D - 299 577 IPR027417 -
Mibi01g3254 720 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 299 577 - -
Mibi01g3254 720 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 302 671 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Mibi01g3254 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 661 IPR027417 -
Mibi01g3254 720 SMART AAA_5 368 530 IPR003593 -
Mibi01g3254 720 MobiDBLite consensus disorder prediction 229 308 - -
Mibi01g3254 720 Gene3D - 578 678 - -
Mibi01g3254 720 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 95 697 - -
Mibi01g3254 720 MobiDBLite consensus disorder prediction 342 364 - -
Mibi01g3254 720 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 578 681 - -
Mibi01g3254 720 Pfam C-terminal, D2-small domain, of ClpB protein 579 649 IPR019489 -
Mibi01g3254 720 CDD AAA 369 480 - -
Mibi01g3254 720 SMART ClpB_D2_small_2 579 672 IPR019489 -
Mibi01g3254 720 Pfam AAA domain (Cdc48 subfamily) 369 572 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g3254 Mibi-ChrMibi01 57634977 57644146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi01g3254 372 471 Miscellaneous Gene Families AT3G02450 36.634 8.87e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g3254 01 57634977 57644146 Mibi01g3254 01 57634977 57644146 ECH