Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g1821 ATGGCGGTTAGGCAATCAGAGAAGCAGATCCCTCCGGAGCCACATTGGGGCTTTTGCCATACCATAATTCATAAGGTGTCACGTAGTTTTGGCCTCTTTATTCAGCAGCTCGGAACCGAGCTTCGCAACGCTGTCTGCATATTTTATTTGGTCCTTCGAGCCCTTGATACTGTTGAGGATGATACTAGCATAGCTACAGATGTCAAGGTGCCAATTTTAATAGCTTTTCATCATCACATTTATGATCGTGATTGGCATTTTTCTTGTGGGACAAAGGAGTACAAAATCTTAATGGACCAGTTTCATCATGTTTCGACTGCATTTCTGGAACTTGAAAAGAACTATCAGGAACTGATTGAGGATATTACCAAAAGGATGGGAGCTGGAATGGCCAAATTTATTTGCAAGGAGGTGGAAACAATTGACGACTATGATGAATATTGTCACTATGTAGCAGGACTTGTTGGGTTGGGTTTATCCAAGCTTTTCCGTGCCTCTGGTTCGGAAGATTTGGTTCCAGATCACCTCTCCAATTCAATGGGTGTGTTCCTTCAGAAAACAAATATTATTCAAGATTACCTGGAAGACATTAATGAGATCCCTAAGTCACGCATGTTTTGGCCTCGGCAGATCTGGAGTAAATATGTTAACAAGCTTGAGGAGTTGAAAGAAGAAGATAATTCTGTCAAGGCAGTGCAATGCCTCAACGACATGGTCACCAATGCTTTGATGCATGTCGAAGATTGCTTACTGTACATGTCTAACTTAAGAGACTTGGCTATATTTCGTTTTTGTGCTATTCCTCAGATCATGGCCATCGGGACTCTTGCATTATGCTACAACAATATTGAAGTCTTCAGAGGTGTAGTTAAAATGAGGCGTGGTCTAACTGCCAAGGTGATTGATCGGACGAAGACGATGTCAGATGTCTATGGTGCTTTCTTTGACTTTTCCTGTATGTTGGAATCCAAGGTTGACAAAAATGATCCTAATGCAACAAAAACATTGAGTAGGGTGGAAGCTATACAAAAGGCTTGCAGAGAATCTGGTTTTATGAGTAAAAGCAAATCTTATATCTTGAAGAGCGAGCCTGGATTTAACTCAGCCACGTTTGTAATGCTTATCTTGGCACTGGCTCTCATTTTCGCATATATCTCTGCCAACCGGGATAACTGA 1176 0.415 MAVRQSEKQIPPEPHWGFCHTIIHKVSRSFGLFIQQLGTELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHHHIYDRDWHFSCGTKEYKILMDQFHHVSTAFLELEKNYQELIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFRASGSEDLVPDHLSNSMGVFLQKTNIIQDYLEDINEIPKSRMFWPRQIWSKYVNKLEELKEEDNSVKAVQCLNDMVTNALMHVEDCLLYMSNLRDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMSDVYGAFFDFSCMLESKVDKNDPNATKTLSRVEAIQKACRESGFMSKSKSYILKSEPGFNSATFVMLILALALIFAYISANRDN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g1821 391 ProSitePatterns Squalene and phytoene synthases signature 1. 147 162 IPR019845 GO:0016765
Mibi01g1821 391 SFLD Isoprenoid Synthase Type I 16 304 - -
Mibi01g1821 391 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 15 346 IPR006449 GO:0004310|GO:0008610
Mibi01g1821 391 FunFam Squalene synthase 1 13 349 - -
Mibi01g1821 391 CDD Trans_IPPS_HH 17 299 IPR033904 GO:0004311
Mibi01g1821 391 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 2 383 IPR044844 GO:0004311
Mibi01g1821 391 SFLD Squalene/Phytoene Synthase Like 16 304 IPR002060 GO:0009058
Mibi01g1821 391 Gene3D Farnesyl Diphosphate Synthase 13 349 IPR008949 -
Mibi01g1821 391 Pfam Squalene/phytoene synthase 24 294 IPR002060 GO:0009058
Mibi01g1821 391 SUPERFAMILY Terpenoid synthases 16 345 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g1821 Mibi-ChrMibi01 26665750 26675435 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g1821 01 26665750 26675435 Mibi01g1821 01 26665750 26675435 ECH