Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi01g0127 ATGCTTGTGATTTGTGCTTTACTGAAAATATTTTCTAGGGCAATCATGAGCGACAAAGGAGAAAAAATCTGTCCTCTGTGTGCCGAAGAGATGGATTTGACAGACCAGCAGTTGAAGCCATGCAAATGCGGTTACGAGATATGTGTGTGGTGTTGGCATCACATATTGGACTTAGCTGAGAAGGATGACACTGGAGGCCGATGCCCAGCATGTCGTGCGCCTTATGACAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCCGAAAGTAATGTGGAGAAAAAGATGAAGAGCCAGAAAGCAAAGTCTAAGTTATCTGAAGGACGGAAGCAACTCAGCAATGTGCGAGTGATTCAGCGAAACCTTGTATACATAGTTGGACTGCCTCTTAATCTAGCAGATGAAAATCTTCTCCAGCAGCAGGATTATTTTGGTAAATATGGGAAGGTCTCGAAAGTGTCAATGACTCGAACGGCTGCTGGTGCTATTCAACAGTTTCCAAACAGTACATGTAGTGTATATATAACTTATTCAAAGGAAGATGAAGCAATTCGGTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCATGTTTTGGAACCACAAAATATTGTCATGCATGGCTTCGAAATGCGCCTTGCAGCAATCCTGATTGTCTATATCTGCATGAGGTTGGCTCTCAAGAAGACAGTTTTACGAAAGATGAAATTATTTCAGCATACACTAGTCGAGTTCAAACTACTGGCGCTGCAAACAATATGCATCAGCATTCAGGGAATGGTTTGCCGCCTCCTATAGATGGTTATCTTAGTCAGTCATCAGGAAAGCTCATTGCTAAAAATGCTTCAAGTAACTCTTCTAGCAATTTGAAAGGTTCACCTCCTAATGGAAGTTCAGGGAGTCCTGTAGTTCTTCCTGCTGCCGCTTCATGGGGCACACAAGCTACAAGCTGTCAGCCTCATGCTGGAGGCTTATTGCATGCAAATAGACCATCTGAGGCAAAACCTGACACAGTCAGTGGCACCCTAGCCTTTTCTTCAGCTGTTGCAGGCACGATTCAGGCTTCTGCATTGCACAGTGATGTGACCCAGAGGTCAACCTCTAGCGGAGGGAATCATATTATGCTGCCTATAGTAGATAATGAAATGTTGAATCCGGTTAAACAATACAATAGTAGTATGGATAATTTACGGAGAGAAGGTGAAAAGGATGCAGTTTCTAAGGTTTCTTCTGCACATGTGAATTTGAACAGTCAGCTGTCTTCTCAAACATTACCCAGAGATAGTGATAGAGGCAATTGTGCTGAAGTGAACACAACAAATTCTGCCAACATCCCCATGCAGTTGTGCAGGTCTAGTTTTGAGGAAGCAATTGCTGCTACCAATGAAGAGATTCAGAACCTGTGCTGTGATATATCCTCAATTAACATTGATAGAGACATTCAAAATGAACACCATTGTATAACCAGACCTAATAGCCCTGCATCTGACTGTAAAATGATTAAATCTTCTCTAGTTAAAGGGTCACAGAATGATGCTGACATATTTAGAGATGCACCAGCTAACACTGTAGCTAGCAAAGCTGCTAAATCAGATAATGGGTTGTGCATTCCAATGGATCAGGGTTATTGGAGATTAGATTCACAAGATCATTCAGTATCAAAGACAACTGAAGTGGAGGATGATACAACGTATTTTGACGAATCAAGATTTAAGGATCCAGAAGTTTGTCGTTCTTCTTATTTGCCAAAACCAGCACATTTTGTTGATTTTTCTAACCATTTCAGTCCTCAACTTCTGCAGCATGGTAAACCTGGCAATGCTATTAATGCAGGTTCTTTATCTGCAGATAATAAAGTTGGGGACGATTATTTATTACGTGCATCTAGTACATTATGTAATCGTTACCCTGAGCAATTGATCTGCAGCAGCCCTTACAATTTAATAAATAGCACCATCGAACATTCTTTAGTGCTTCAAGGAGAAAGAAATGAGCAATGCATTAGAAGTTTTCCCAGCATAGCAGCTGATGTTAGAATTGATGCTGCTATTGATAAGGGTGAAAGTAGTATAATTTCTAATATATTGTCAATGGATTTTGAACCATGGGAAGGCTCATTGACATCACAAAATTTGGCTAAAGTGTTGGGTGATGAAGCTTGTTACCAATGTGATCCATTAAAGAAATCTGATTCATGGAAAGTCCAGAATAACAGCCAGTCAAGGTTCTCTTTTGCAAGACAGGAGGAGTCCAAAATTCAAACATTGGATGCACTTCCATGTATTGGTGTTGGCAGGCAACTGACGACCTCCTCACTCATCCAGGACTTAGCAGAAAAAGACTCGTGTGTACATAAGTTGGGCATTGGAAATGGTTTCCCTACCAGTAACTTTGAGGAATCTGAGAATGTAGGCAGTGGTCACTCTATTTCTTCTAATAAGCTTTCTGTTGTTTCAAGAGCTCAGAATGCTGCTCCACCGGGATTTTCTGTTCCGAGCAGGGCACCACCACCAGGTTTCTCTTCTCATGAGAGAGCGGAACAGGCATATGACTCCTCATCTGGAAATATAGAATTTAATGATCCTGCTATTTTGGCAATTGGTATGGGAAGATTTGAAGGTTCGCTAAATAGCACTGGTCTGGACATGAGATCAAATTTTGTACCACAATTTAATCACTTGGAAAATGAGGCTGGACTTCAATTATTGATGCAACAATCACTCTTACAGCAGCAGAACCTTAAATTTTCTGAATTTGGGAATACGTTTTCTCACCTTAGTGATTCTTATAGACTCTCTTCAAGATTAGATCACTCACAGGCCAGTAATTTGTTACCTTTTCCCCAGTTGCCTTCACAGCAGACTAGAAATGCAATCTTGTCAAATGGACATTGGGATGGGTGGAATCAGGTGCAGAGTGAAAACAATCTGGGAGTGGCTGAACTTCTGAGAAATGAAAGATTTGGACTTAACAAGTTTTATGCTGGATATGAGGATTCAAAATATAGGATGCAAAATTCAGGTGGTCTATACAACAGAGCGTATGGGATGTGA 3081 0.4103 MLVICALLKIFSRAIMSDKGEKICPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDLAEKDDTGGRCPACRAPYDKEKIVGMAANCERLVAESNVEKKMKSQKAKSKLSEGRKQLSNVRVIQRNLVYIVGLPLNLADENLLQQQDYFGKYGKVSKVSMTRTAAGAIQQFPNSTCSVYITYSKEDEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSQEDSFTKDEIISAYTSRVQTTGAANNMHQHSGNGLPPPIDGYLSQSSGKLIAKNASSNSSSNLKGSPPNGSSGSPVVLPAAASWGTQATSCQPHAGGLLHANRPSEAKPDTVSGTLAFSSAVAGTIQASALHSDVTQRSTSSGGNHIMLPIVDNEMLNPVKQYNSSMDNLRREGEKDAVSKVSSAHVNLNSQLSSQTLPRDSDRGNCAEVNTTNSANIPMQLCRSSFEEAIAATNEEIQNLCCDISSINIDRDIQNEHHCITRPNSPASDCKMIKSSLVKGSQNDADIFRDAPANTVASKAAKSDNGLCIPMDQGYWRLDSQDHSVSKTTEVEDDTTYFDESRFKDPEVCRSSYLPKPAHFVDFSNHFSPQLLQHGKPGNAINAGSLSADNKVGDDYLLRASSTLCNRYPEQLICSSPYNLINSTIEHSLVLQGERNEQCIRSFPSIAADVRIDAAIDKGESSIISNILSMDFEPWEGSLTSQNLAKVLGDEACYQCDPLKKSDSWKVQNNSQSRFSFARQEESKIQTLDALPCIGVGRQLTTSSLIQDLAEKDSCVHKLGIGNGFPTSNFEESENVGSGHSISSNKLSVVSRAQNAAPPGFSVPSRAPPPGFSSHERAEQAYDSSSGNIEFNDPAILAIGMGRFEGSLNSTGLDMRSNFVPQFNHLENEAGLQLLMQQSLLQQQNLKFSEFGNTFSHLSDSYRLSSRLDHSQASNLLPFPQLPSQQTRNAILSNGHWDGWNQVQSENNLGVAELLRNERFGLNKFYAGYEDSKYRMQNSGGLYNRAYGM 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi01g0127 1026 SMART rrm2_1 126 207 IPR003954 GO:0003676
Mibi01g0127 1026 MobiDBLite consensus disorder prediction 830 864 - -
Mibi01g0127 1026 MobiDBLite consensus disorder prediction 289 314 - -
Mibi01g0127 1026 MobiDBLite consensus disorder prediction 289 309 - -
Mibi01g0127 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 92 IPR013083 -
Mibi01g0127 1026 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 211 IPR000504 GO:0003723
Mibi01g0127 1026 CDD mRING-HC-C4C4_CNOT4 24 72 IPR039515 -
Mibi01g0127 1026 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 126 207 - -
Mibi01g0127 1026 Gene3D - 126 207 IPR012677 -
Mibi01g0127 1026 ProSiteProfiles Zinc finger RING-type profile. 24 72 IPR001841 -
Mibi01g0127 1026 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 205 IPR000504 GO:0003723
Mibi01g0127 1026 CDD RRM_CNOT4 120 219 IPR034261 -
Mibi01g0127 1026 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 1020 IPR039780 GO:0004842|GO:0030014
Mibi01g0127 1026 Pfam RING/Ubox like zinc-binding domain 24 76 - -
Mibi01g0127 1026 SUPERFAMILY RING/U-box 14 81 - -
Mibi01g0127 1026 SUPERFAMILY RNA-binding domain, RBD 119 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi01g0127 Mibi-ChrMibi01 1334667 1340970 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0127 01 1334667 1340970 Mibi07g0240 07 3084182 3087348 CCT
Mibi01g0127 01 1334667 1340970 Mibi01g0127 01 1334667 1340970 ECH