Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g04032 ATGCCAACTATTTTGCTTAGAATTTTCCTTTTATACAACGTTGTCAATTCATTTCTCATTAGTCTTGTTCCCAAGAAACTTATAACCTTCTTCCCTCATTCTTGGTTCACTCATCAAACCTTAACCAATCTCACCCAAACCACAAATACTACTTCCACATCAAAAAGAGGTCTTGTTTTTACCAAGGCAATAACAATGGATCCAAATGAGCTCAAACGTGTTTTCCAAATGTTTGACCGCAACGACGACGGCCGAATAACAAAGAAAGAGTTGAATGATTCCTTGGAGAATTTAGGAATCTTCATCCCTGACAAAGAGCTAAGTCAAATGATCGAGAAGATTGATGTGAACCGAGACGGGTGTGTGGACATTGAGGAATTTAGAGAGTTGTATGAGTCAATTATGAGTGAACGTGATGAAGAGGAGGAAGAAGATATGAGGGAAGCATTCAACGTGTTTGATCAGAACGGTGATGGATTCATTAGCGTTGATGAGTTGAGATCGGTTTTGGTTTCGTTGGGATTGAAACAAGGAAGAACAGTTGAAGATTGTAAGAAGATGATAGGGAGTGTTGATGTTGATGGAAATGGTTTGGTTGATTATAAGGAGTTTAAGCAAATGATGAAAGGTGGTGGGTTCACTGCTCTCAGTTAG 654 0.3899 MPTILLRIFLLYNVVNSFLISLVPKKLITFFPHSWFTHQTLTNLTQTTNTTSTSKRGLVFTKAITMDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFRELYESIMSERDEEEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGSVDVDGNGLVDYKEFKQMMKGGGFTALS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g04032 217 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Mepo6g04032 217 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 144 209 - -
Mepo6g04032 217 FunFam calmodulin-like protein 3 139 212 - -
Mepo6g04032 217 Gene3D - 34 144 - -
Mepo6g04032 217 FunFam Calmodulin-like protein 3 66 135 - -
Mepo6g04032 217 SUPERFAMILY EF-hand 69 210 IPR011992 -
Mepo6g04032 217 Coils Coil 124 144 - -
Mepo6g04032 217 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Mepo6g04032 217 SMART efh_1 106 134 IPR002048 GO:0005509
Mepo6g04032 217 SMART efh_1 145 173 IPR002048 GO:0005509
Mepo6g04032 217 SMART efh_1 183 211 IPR002048 GO:0005509
Mepo6g04032 217 SMART efh_1 70 98 IPR002048 GO:0005509
Mepo6g04032 217 Pfam EF-hand domain pair 143 209 IPR002048 GO:0005509
Mepo6g04032 217 Pfam EF-hand domain pair 70 132 IPR002048 GO:0005509
Mepo6g04032 217 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Mepo6g04032 217 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Mepo6g04032 217 Gene3D - 145 210 - -
Mepo6g04032 217 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Mepo6g04032 217 CDD EFh 70 130 IPR002048 GO:0005509
Mepo6g04032 217 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Mepo6g04032 217 CDD EFh 149 209 IPR002048 GO:0005509
Mepo6g04032 217 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Mepo6g04032 217 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g04032 Mepo-Chr6 52587464 52588882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g04032 5 215 EF-hand Containing Proteins AT2G43290 63.551 5.38e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g04032 K13448 - gmx:100527487 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g04032 6 52587464 52588882 Mepo6g04032 6 52587464 52588882 ECH
Mepo6g04032 6 52587464 52588882 Mepo2g02209 2 31897166 31898120 PCT