Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g03046 ATGAGAAACATTACAAAAATAGCATGCTTCAATATTCTTTTTCTTTCTATAATAGCACTTCATGTTCAATGCCGTTTTCTTCCTAATAAATTGATTTCCAATGGAGTTGATGATGTTCAAGCAGAAGAAGATTCTTATCTACTTCTTAATAATGATGATAATGAGAAAGGGGTTATTATTGAATCTTCTTCTAATCCAGAGGAGTATTGTAAACAAATGTATGGGTTTTTGCCATGTTCTAATAACATTCTTGGTCATTTGTTTCTGATTTTGGTTTATGAATACTTGTTATTCCATGGAGAATCATATTTGGCTGCTGGAGGTGAACAAATCTTCAAGATTCTTGGTCCAGGTGTTTTTGGTGCTAGTGCTTTTGATATTCTTGGTGCCCTTCCTGAATCCTTAATTCTTCTTGTTACCGGACTTTCAAGTGATAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTTGGTTTGTTAGCTGGATCATCCATCTTGCTTCTCACAGTTGTGTGGGGGACTTGTGTTATTGTTGGCAAGCAAAGCTTCAGAAATGACTCACATTCTTCTAATACCTCAAATTCATCCGGAGGAAGAATAAAACAAGCTTTGACTGGTTATGGTATTACTATGGATGTAGACACTAGAAAGATGGCAAGAATTATGCTTTTCTCTGTTATACCACTCCTCATAATGCAGATTCCTACATTGTTCCACTTCTCTACAACATTACACAATGTGACCTTGATGATTTCTCTCATAATTGCTGTCACTTTTCTCGTCTCATACTTCATTTACCAGATCTTTAAACCTCAGATAGAGAAAACAAGATTAGAATACATAAAGCATGATGATTTAATTTTAAGAATCTTTGAACGTGTTGAAAAACAAACTCTACAAAAGATCCTAACGGAGGATGGAACTCCCGATGTAGCTGCCATAAATCGGCTATACCATGAATTCAGTCAACATGGGAGAGAACACTTATCACCTTCTGATGTAAGAGAGTTATTGTTTGGGAACAATTTAAACAACCCAGATATTAGAGATGAACAAATAACAGACATGTTAAAAGTTTTTGACAAAGATGGTGACCAAATTATAACCAAGGAAGAATTTGTTAATGGCGTAACAGAATACTTTAACCAAACAAAGCATGCTCTGGATAAACAATACCTTCCCAAAGAAAATATGAGCAGAATGTATCAGAGTTTTATCAAACCATGGATTGAACACGTGAGAAAAGAGCGTGAATTGAAAGAACATCTTATTTCTGGAGTCTTGAGTCATGCTCAGAGTGATAGGGTTGGTAGGCTGCTCAAAGATGATGGTACACCTGATAAAGATGCTATCAAAAGGTTCTTTGAGGAAATTGATAGCAATGACGATAAACATGTTTCGAGATCTGAGTTAGAAAATGCAGTGAAGAAGATTAAATTTGGTACGACTGCAGAGGAAGCAGTGACAAAATTCCTTCAAGTTCTTGATGTCAACGGAGACGATGAAATTAGTGAGAATGAATTTGTTGATGGTATAACCGAATTGATAAACTCATATTTTAAACAAGGTGCTAGCTCAGAATCTCCTTCTCATCATGAAACTCATCAAACATGGGAAGATGTTGAGAAGGTAATGGAAGAGAATCAAACCAAAGGGGTGACTGCATGGTTAGAAGCTATAGCATATGTGGTGTTGGGAATTACTATGTTGTCACTTCTTGCAGAGCCTCTAATAGCAAGTGTTCAAAAATTCTCTGAAGCTGCAGGAATTTCATCATTTTTCATCTCTTTCATTTTAGTCCCTTTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCACAAAAAAAGTAGTAATACTTCTCACACAATGTATGAGATTTATGGAGCAGTGTTTATGAACAACATTCTTGGCTTTGTGGTGATATCTATTCTTATATATATGAGAGATATCACTTGGGAATTTTCAGCTGATGTATTGGTGGTGGCAATTGTTTGTATTGTGATGGGTCTCACCACTAGTTTTCGTTCCACTTTTCCTCTGTGGACATCCTTCCCAACATACCTCTTGTATCTAATATCATTGGTTATGGTTTTTGTTCTTAAAGATGTTCTCAATTATATGTAA 2139 0.3595 MRNITKIACFNILFLSIIALHVQCRFLPNKLISNGVDDVQAEEDSYLLLNNDDNEKGVIIESSSNPEEYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILLVTGLSSDKESAQEYASTGVGLLAGSSILLLTVVWGTCVIVGKQSFRNDSHSSNTSNSSGGRIKQALTGYGITMDVDTRKMARIMLFSVIPLLIMQIPTLFHFSTTLHNVTLMISLIIAVTFLVSYFIYQIFKPQIEKTRLEYIKHDDLILRIFERVEKQTLQKILTEDGTPDVAAINRLYHEFSQHGREHLSPSDVRELLFGNNLNNPDIRDEQITDMLKVFDKDGDQIITKEEFVNGVTEYFNQTKHALDKQYLPKENMSRMYQSFIKPWIEHVRKERELKEHLISGVLSHAQSDRVGRLLKDDGTPDKDAIKRFFEEIDSNDDKHVSRSELENAVKKIKFGTTAEEAVTKFLQVLDVNGDDEISENEFVDGITELINSYFKQGASSESPSHHETHQTWEDVEKVMEENQTKGVTAWLEAIAYVVLGITMLSLLAEPLIASVQKFSEAAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSHTMYEIYGAVFMNNILGFVVISILIYMRDITWEFSADVLVVAIVCIVMGLTTSFRSTFPLWTSFPTYLLYLISLVMVFVLKDVLNYM 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g03046 712 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Mepo6g03046 712 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Mepo6g03046 712 Pfam Sodium/calcium exchanger protein 560 703 IPR004837 GO:0016020|GO:0055085
Mepo6g03046 712 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Mepo6g03046 712 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Mepo6g03046 712 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Mepo6g03046 712 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 73 705 IPR004713 GO:0006812|GO:0008324|GO:0016020
Mepo6g03046 712 Gene3D - 260 388 - -
Mepo6g03046 712 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Mepo6g03046 712 SMART efh_1 487 515 IPR002048 GO:0005509
Mepo6g03046 712 SMART efh_1 352 380 IPR002048 GO:0005509
Mepo6g03046 712 SMART efh_1 450 478 IPR002048 GO:0005509
Mepo6g03046 712 CDD EFh 451 513 IPR002048 GO:0005509
Mepo6g03046 712 Gene3D - 389 523 - -
Mepo6g03046 712 Pfam EF-hand domain pair 449 510 IPR002048 GO:0005509
Mepo6g03046 712 SUPERFAMILY EF-hand 313 513 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g03046 Mepo-Chr6 42050566 42057504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g03046 401 705 EF-hand Containing Proteins AT1G53210 40.000 3.56e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g03046 - - gmx:100799062 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03046 6 42050566 42057504 Mepo6g03046 6 42050566 42057504 ECH