Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02414 ATGGAAAACAGTAGCAGCAGTAGGTCGGAGCAGACAGTTGAAGATGGGAAACTGTATAGACATCTCAATTCTCTTATCGTCGCTCATCTTCGTCACAACAACCTAACTCAGGCTGCCACTGCTGTTGCTTCAGCAACTATGACACCATTCAATGTACAAGCTCCACCCAACAAGCTTCTTCAATTGCTTGCTAAGGGTCTTGCAGCAGAAAAGGATGACTTGCCAAGGGGGACTTCATCTTCTCCTTTTCAAGATTTGGGAGCATCATTGCCCTTGCCTCGTCCCGGTGCAACAACCATTGATTTCAGCTCTTTGCCAGATGTAAAAGGTTCGTCAAAAAGTTTCCCAAAGCATGAAACACGACACCTTTCAGAACACAAGAATGTTGCCAGATGTGCTAGGTTTAGTCCTGATGGAAGATTTGTTGCCACTGGAAGTGCAGATACATCAATAAAACTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTCCCAGATGCAAAGGATGGTCCTGTGCGGTCTGTAGTAAAAACATATTATGACCATATACAGCCAGTAAATGATCTGGATTTTAATCCGCAAGGTACTATCCTGGTTTCTGGAGCCAAAGATCAGACAATAAAGTTTTTTGATATTTCAAAAACCAACGCCAAGAGGTCATACAGGGTTATCCAGGACACGCACAATGTTCGCTCTGTATCTTTTCACCCCTCAGGGGACTTTCTGTTAGCAGGCACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGCTATCTGTCAGCAAATATCCCAGACGCTAACCCTAATGGAGCCATAAACCAGGTTAGATATTCTTGTTCAGGTTCCATGTATGTTACAGCATCGAAAGATGGTGCGATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAAGTGCAGCACATGGAACAGCAGAGGCTACTAGTGCAATTTTTACAAGCGATCAAAGGTTTGTCCTCTCCTGTGGGAAGGACTCTACCATAAAGCTTTGGGAGGTTGGCTCAGGCAGATTAGTCAAACAATATCTCGGTGCCATACACACACAACTGAGATGTCAGGCTATTTTCAATGCAACAGAAGAATTTATTCTCTCCATAGATGAACTGAACAACGAGGTCATTATCTGGGATGCGATGACAACAGAAATAGTAGCGAAATGGCCTTCTAATCATGTTGGTGCACCGCGCTGGCTTGAACACTCCCCTGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGATCAATTCGATTCTGGAAGGAGGTTTAA 1308 0.435 MENSSSSRSEQTVEDGKLYRHLNSLIVAHLRHNNLTQAATAVASATMTPFNVQAPPNKLLQLLAKGLAAEKDDLPRGTSSSPFQDLGASLPLPRPGATTIDFSSLPDVKGSSKSFPKHETRHLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRSVVKTYYDHIQPVNDLDFNPQGTILVSGAKDQTIKFFDISKTNAKRSYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPDANPNGAINQVRYSCSGSMYVTASKDGAIRLWDGITANCVRSISAAHGTAEATSAIFTSDQRFVLSCGKDSTIKLWEVGSGRLVKQYLGAIHTQLRCQAIFNATEEFILSIDELNNEVIIWDAMTTEIVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSIRFWKEV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02414 435 SUPERFAMILY WD40 repeat-like 115 433 IPR036322 GO:0005515
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 157 - -
Mepo6g02414 435 CDD WD40 119 433 - -
Mepo6g02414 435 Gene3D - 109 434 IPR015943 GO:0005515
Mepo6g02414 435 FunFam Cleavage stimulation factor subunit 50 106 435 - -
Mepo6g02414 435 Pfam WD domain, G-beta repeat 306 344 IPR001680 GO:0005515
Mepo6g02414 435 Pfam WD domain, G-beta repeat 227 250 IPR001680 GO:0005515
Mepo6g02414 435 Pfam WD domain, G-beta repeat 175 211 IPR001680 GO:0005515
Mepo6g02414 435 Pfam WD domain, G-beta repeat 120 154 IPR001680 GO:0005515
Mepo6g02414 435 Pfam WD domain, G-beta repeat 274 301 IPR001680 GO:0005515
Mepo6g02414 435 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Mepo6g02414 435 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Mepo6g02414 435 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Mepo6g02414 435 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 354 IPR001680 GO:0005515
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 304 345 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 172 211 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 217 255 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 116 155 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 258 301 IPR001680 GO:0005515
Mepo6g02414 435 SMART WD40_4 393 433 IPR001680 GO:0005515
Mepo6g02414 435 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 7 434 IPR044633 GO:0005848|GO:0031124
Mepo6g02414 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02414 Mepo-Chr6 33100525 33107703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02414 176 432 Miscellaneous Gene Families AT5G08390 22.093 7.86e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02414 K14406 - gmx:100809908 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g02414 6 33100525 33107703 Mepo6g02414 6 33100525 33107703 ECH