LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g01713	ATGAAATTTAAGGGTGATATTGGTTTATTCCTCCTTCTTGTTGCCACTTTTTTGGTGTATGCATCCGCTGGTAATTTTATGAAAGATTTTGAAATAACATGGGGTGACAGTCGTGCCAAAGTCCTTGAAAATGGGCAGAGTCTCAGCCTCACCTTAGACAAATCTTCTGGCTCTGGCTTTCGTTCCAAATATGAGTACTTGTTTGGGAAAATTGATATGCAACTCAAACTTGTGGCTGGTAACTCTGCTGGCATTGTCACAGCCTATTATCTATCTTCTCTAGGGTCTACTCATGATGAAATAGACTTTGAATTTCTTGGGAACTTGAGTGGTGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGGAATAGAGAGCAACAATTCTATTTGTGGTTTGACCCTACTAAGGACTTCCACACATATTCCCTTCTTTGGAATCCTAAAAGCATCATATTCTCTGTGGATGGAAGACCAATAAGGGAGTTCAAGAATTTAGAATCAAAAGGGGTTCCTTTTCCAAAGAACCAAGCCATGAGGATATATTCAAGTCTTTGGAATGCAGATAATTGGGCCACTAGAGGTGGGATTGTGAAAACAGATTGGACCAACGCTCCATTCATTGCCTCATATAGAAACTTCAATGCAAAAGCTTGTATTTGGACTTCTTCAGGTTCTTCTTGTTCTTCCAACAAATCTCCATCATCATCATCCACATCCCAATCATGGTTTAGAGAATCACTTGACTCAACTGGGATGAATAAAATTCGTTGGGTGCAAAAGCATTACATGATATATAATTATTGCACTGATACTAAACGGTTCCCACAAGGCTTCCCAGCTGAATGTATTACCAGTAAACCACACAAATTGTAA	885	0.3898	MKFKGDIGLFLLLVATFLVYASAGNFMKDFEITWGDSRAKVLENGQSLSLTLDKSSGSGFRSKYEYLFGKIDMQLKLVAGNSAGIVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSLLWNPKSIIFSVDGRPIREFKNLESKGVPFPKNQAMRIYSSLWNADNWATRGGIVKTDWTNAPFIASYRNFNAKACIWTSSGSSCSSNKSPSSSSTSQSWFRESLDSTGMNKIRWVQKHYMIYNYCTDTKRFPQGFPAECITSKPHKL	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g01713	294	PIRSF	EndGlu_transf	6	291	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mepo6g01713	294	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	289	IPR013320	-
	Mepo6g01713	294	CDD	GH16_XET	21	286	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mepo6g01713	294	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Mepo6g01713	294	Gene3D	-	13	291	-	-
	Mepo6g01713	294	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	20	214	IPR000757	GO:0004553\|GO:0005975
	Mepo6g01713	294	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	242	286	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Mepo6g01713	294	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Mepo6g01713	294	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Mepo6g01713	294	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Mepo6g01713	294	FunFam	Xyloglucan endotransglucosylase/hydrolase	13	288	-	-
	Mepo6g01713	294	Pfam	Glycosyl hydrolases family 16	27	206	IPR000757	GO:0004553\|GO:0005975
	Mepo6g01713	294	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	23	286	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g01713	Mepo-Chr6	19243057	19244908	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g01713	9	289	Glycoside Hydrolase	AT4G25810	67.616	1.58e-147	414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo6g01713	K14504		-	gmx:100807063	455.677

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo1g00432	1	4156120	4158094	Mepo6g01713	6	19243057	19244908	PCT