Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01640 ATGCTTCAATCATCAATGGAAGGTACCCTCTTCCCTAATAGACCAGTTCTTCCACTCCCCAGTAAAAAACCAACCCAAGCATTGAAATTCAAACCAACATTTTCACATTCTCCACCTCCAACACCATCACAAACACAAACACAAACACCACCTTCATTTCATATAGATTCTCTTCTTCATCATCTTAAACACCTTTCTTCAACTCCTATAATCACTCACACACAAACACTTGTCCCTAATAACAATAACAATAACACCCATTTCACTTCTCTTCAAATTCAACTTGATAAAAAAGATGAAAATCTTCAACAAGGTAATACAAAACGACCCATTTCATCTTCTGTTGATTATAACCATTTTGATGATGTAAGGTTTGGATTTTTATCGGAAAAAAGTAAGTTTATGCTGAATTGCATTGTTGGGTCGTCTTTGAATGACTTGATTGAGTTTTTCAATTCTGTGAAAGGTGAGTTACTTGAATCTGATATTACTAGTTTGTTGAAGGGTTTGGATATTTCTGGGAATTGGGAGAGAGCTTTTTTGTTGTTTGAATGGGTTTGGTTGAATTTTGGGTCTGAAAATAAGAAGGTGGATGATCATTCTGTTGAATTTATGGTTAAGATGTTAGGTAGAGAATCACAATATTCAATTGCTTCTAAGTTGTTTGATATAATTCCTGTTGAAGAATATTCACTCGATGTTAAGGCTTGTACTACTGTTCTTCATGCTTATGCGCGAACCGGGAAGTATAAACGGGCTATCGAGATTTTTGAGAAGATGAAGGAGACTGGTCTTGATCCAACTTTGGTTACTTACAATGTTATGCTTGATGTTTATGGGAAGATGGGTCGGGCTTGGAGTATGATTTTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTGAGTTTGATGAGTTTACGTGTAGCACGGTGATATCTGCTTGTGGGAGAGAGGGTATGCTTGATGAAGCTAGGAGGTTTTTTGATGATTTGAAATTGAATGGATATAAACCGGGAACGGTTACATATAACTCGATATTGCAGGTTTTTGGGAAGGCTGGAGTATACATAGAGGCATTGAACATCTTAAAAGAAATGGAGGATAATAATTGTGAGCCGGATGCTATTACTTACAATGAGCTTGTGGCAGCGTATGTAAGAGCCGGGTTTCATGATGAAGGGGCTGCTGTCATTGATACAATGGCAAGTAAAGGAGTTATGCCGAATGCTATTACGTATACTACTGTGATAAATGCCTATGGTAGGGCAGGAGATGCGGACAAGGCGTTAGAGTTATTTGGTCAGATGAAGGAGTTGGGGTGTGTTCCTAATGTATGCACGTATAACACTGTTCTTGTGTTGTTAGGCAAGAGGTCAAGATCAGAAGACATGATTAAGATTCTTTGCGAAATGAAATTGAATGGTTGTCCTCCTGATCGCATAACGTGGAACACGATGCTTGCTGTATGCGGTGAGAAGGGTAAGCAAAAATTTGTTAGCCAGGTTTTAAGGGAAATGAAAAACTGTGGCTTTGAGCCTGACAAAGACACATTCAATACATTAATTAGTGCCTATGGTCGGTGTGCATCTGAAGTTGATGTTGCAAAAATGTACGGTGAAATGGTTGCAGCAGGATTTACTCCATGCATAACAACTTACAATGCTCTTCTTAACGCTCTTGCTAGGCGAGGCGATTGGAAAGCGGCCGAATCAGTCGTTCTCGACATGCGGAGAAAGGGATTTAAGCTTAATGAAACTTCGTACTCACTTTTGCTTCATTGTTATTCTAAAGCTAGGAATGTCAGGGGTTTAGAGAAGGTTGAGATGGAAATTTATGATGGCCACGTCTTTCCTAGCTGGACGCTTTTGAGAACCCTTGTCCTTACAAACTACAAGTGCAGACAGCTTCAGGGAATGGAAAGGGCATTTCATCAGTTGCAAAAGAATGGATACAAACTCGATATGGTTGTGATTAACTCCATGCTTTCGATGTTTGTCCGAAACCAGAAGCTCGAGAAGGCTCATGAAATGTTAGATGTCATTCACGGAAGCGGGTTGCTGCCGAATCTTGTGACATATAATAGCTTGATAGACTTGTATGCCCGAGTTGGTGATTGTTGGAAAGCAGAAGAAATGCTCAAGGATATTCAAAACTCCGGTATAAGTCCAGACGTTGTGTCGTACAATACCGTCATCAAGGGATTTTGTAAAAAAGGGCTTGTGCAGGAAGCTGTAAGAGTTCTTTCGGAGATGACTGCTAATGGAATTCAACCATGTCCTATTACATTCAATACTTTCTTGTCATGCTATGCAGGGAAGGGGCTTTTTGCTGAAGCAGATGAAGTCATTAGATATATGATTAAACATGGTTGCATGCCAAATGAGCTAACTTACAAGATTGTAATTGATGGTTATATTAAAGCGAAAAAGCATAAAGAAGCAATGGACTTTGTGTCTAAGATTAAAGAGATTGATATCTCTTTTGATGATCAATCTTTGAAAAAGCTAGCTTCTTGCATTAGGGAGAGTTTGGAGTCTTGA 2541 0.392 MLQSSMEGTLFPNRPVLPLPSKKPTQALKFKPTFSHSPPPTPSQTQTQTPPSFHIDSLLHHLKHLSSTPIITHTQTLVPNNNNNNTHFTSLQIQLDKKDENLQQGNTKRPISSSVDYNHFDDVRFGFLSEKSKFMLNCIVGSSLNDLIEFFNSVKGELLESDITSLLKGLDISGNWERAFLLFEWVWLNFGSENKKVDDHSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARRFFDDLKLNGYKPGTVTYNSILQVFGKAGVYIEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGRAGDADKALELFGQMKELGCVPNVCTYNTVLVLLGKRSRSEDMIKILCEMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKDTFNTLISAYGRCASEVDVAKMYGEMVAAGFTPCITTYNALLNALARRGDWKAAESVVLDMRRKGFKLNETSYSLLLHCYSKARNVRGLEKVEMEIYDGHVFPSWTLLRTLVLTNYKCRQLQGMERAFHQLQKNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHGSGLLPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAVRVLSEMTANGIQPCPITFNTFLSCYAGKGLFAEADEVIRYMIKHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASCIRESLES 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 376 410 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 341 375 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 656 689 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 726 758 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 481 514 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 552 585 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 306 339 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 236 268 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 517 548 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 446 479 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 270 304 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 691 725 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 411 445 IPR002885 -
Mepo6g01640 846 NCBIfam pentatricopeptide repeat 761 795 IPR002885 -
Mepo6g01640 846 Pfam PPR repeat 306 335 IPR002885 -
Mepo6g01640 846 Pfam PPR repeat 720 752 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 794 828 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 724 758 IPR002885 -
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 140 284 IPR011990 GO:0005515
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 625 741 IPR011990 GO:0005515
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 742 845 IPR011990 GO:0005515
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 285 388 IPR011990 GO:0005515
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 389 496 IPR011990 GO:0005515
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Mepo6g01640 846 PANTHER OS03G0856100 PROTEIN 328 606 - -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 654 688 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 759 793 IPR002885 -
Mepo6g01640 846 SUPERFAMILY HCP-like 243 440 - -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 689 723 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Mepo6g01640 846 MobiDBLite consensus disorder prediction 1 52 - -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Mepo6g01640 846 Gene3D Tetratricopeptide repeat domain 497 624 IPR011990 GO:0005515
Mepo6g01640 846 Pfam Pentatricopeptide repeat domain 643 700 IPR002885 -
Mepo6g01640 846 Pfam Pentatricopeptide repeat domain 232 282 IPR002885 -
Mepo6g01640 846 Pfam Pentatricopeptide repeat domain 466 526 IPR002885 -
Mepo6g01640 846 Pfam Pentatricopeptide repeat domain 397 458 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 303 IPR002885 -
Mepo6g01640 846 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 284 386 - -
Mepo6g01640 846 Pfam PPR repeat family 759 806 IPR002885 -
Mepo6g01640 846 Pfam PPR repeat family 548 596 IPR002885 -
Mepo6g01640 846 Pfam PPR repeat family 338 385 IPR002885 -
Mepo6g01640 846 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01640 Mepo-Chr6 18114913 18118583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01640 261 823 Glycosyltransferase AT1G05670 24.382 1.52e-50 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01640 K17710 - gmx:100803889 1208.74