Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01472 ATGTCACATTGTAGGATTTTCCACCACATTCTCAAACGTTGTAAAGCTTCCAAAACCGTTGCTAAAACTCATGCAAGGATCGTTATACTCGGTTATGCCACATACCCATCTCTTGTAGCGTCTCTAATATCAACCTATGCACATTGCCACCAACCCAACATAGCCCATCATGTGTTTTCCAGAGTTATGAATTTATTCAACATGAATTTGGTGATTGAAAGCTTAGTGAAAAATGGTGAATGTGATATTGCCAAGAAGATGTTTGATAAAATGCCTGTTAGAGATGTGGTTACTTGGAACACCGTCATTGGAGGGTATGTTAAAAACTCGCGCTTTCTTGATGCATTGAGTATTTTTCGCTGCATGTTGAATGCCAAAGTTGAGCCTGATGGGTTTACTTTTGCTTCTGTGGTGACGGGGTGTGCACGTATTGGCTCATTTTGTAATGCGAAGTGGGTGCATGGTTTAATGGTTGAGAAAAGGGTTGAGCTGAATTATATACTCAGTGCTGCTTTGGTTGACATGTATGCTAAATGTGGTAGGATTGATGTTTCGAAGCAGGTTTTTGAGTGTGTGGTGCGTGATGATGTTTCTGTTTGGAATGCTATGATTAATGGGTTGGCCATTCATGGACATGCTTTGGATGCAACTATGGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCGGATTCTGTTACTTTTGTCGGGATTTTGAAAGGTTGTAGTCACTGTGGATTAGTTGAGGTAGGTCGCAAGTACTTTGAAATGATGCGGAAACAATTTTTGATTAGACCGCAGCTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGCATTTGGAAGAGGCATATTCCATGATTAAGGCAATGTCGGTGGAGCCTGATGTTGTTATTTGGAGATCACTTTTGAGTGCTTGTAGGATCCATGGAAAGAAAGAACTTGGCGAATTCGCTATTGCGAACATTTCCTGTCTTGAGAGTGGGGATTTTGTCTTGCTGTCAAACATGTATTGCTCTTTCAAGAATTGGCATGGTGCTGAGAGGGTGAGGCACATGATGAAAAAGGGAGGAGTTCGTAAAAAGCGTGGTAAGAGCTGGATTGAATTGGGGGGAAGCATTCATCAATTTAATGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTTACAGGGTTCTGGAAGGTTTGATGCAGAGAGCTAAACTGGAAGGATTCGCACCCTTGACAGAACTCGTTTTGATGGATGTTTCTGAAGAGGAAAAGGAGGCAAATTTAACATTTCATAGCGAGAAGTTGGCTTTGGCTTACGGAGTTCTGAAAAGTAGCCCTGGAACAAAAATCACGATTTCCAAGAACTTGCGTATTTGTCAAGACTGTCATAATTGGATTAAAATTGTCTCAAGGATGTTAAACAGAGAGATAATTGTGAGGGATCGCATCCGTTTTCATCAATTTGAAGGTGGGTTTTGCTCTTGTGGAGACTACTGGTAG 1503 0.4145 MSHCRIFHHILKRCKASKTVAKTHARIVILGYATYPSLVASLISTYAHCHQPNIAHHVFSRVMNLFNMNLVIESLVKNGECDIAKKMFDKMPVRDVVTWNTVIGGYVKNSRFLDALSIFRCMLNAKVEPDGFTFASVVTGCARIGSFCNAKWVHGLMVEKRVELNYILSAALVDMYAKCGRIDVSKQVFECVVRDDVSVWNAMINGLAIHGHALDATMVFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYFEMMRKQFLIRPQLEHYGTMVDLLGRAGHLEEAYSMIKAMSVEPDVVIWRSLLSACRIHGKKELGEFAIANISCLESGDFVLLSNMYCSFKNWHGAERVRHMMKKGGVRKKRGKSWIELGGSIHQFNAADQSHAEMKAIYRVLEGLMQRAKLEGFAPLTELVLMDVSEEEKEANLTFHSEKLALAYGVLKSSPGTKITISKNLRICQDCHNWIKIVSRMLNREIIVRDRIRFHQFEGGFCSCGDYW 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01472 500 Pfam PPR repeat 270 294 IPR002885 -
Mepo6g01472 500 Gene3D Tetratricopeptide repeat domain 9 151 IPR011990 GO:0005515
Mepo6g01472 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Mepo6g01472 500 Pfam PPR repeat family 94 143 IPR002885 -
Mepo6g01472 500 Pfam PPR repeat family 196 243 IPR002885 -
Mepo6g01472 500 FunFam Pentatricopeptide repeat-containing protein 168 391 - -
Mepo6g01472 500 Pfam E motif 313 372 IPR046848 -
Mepo6g01472 500 Pfam DYW family of nucleic acid deaminases 408 500 IPR032867 GO:0008270
Mepo6g01472 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Mepo6g01472 500 NCBIfam pentatricopeptide repeat 97 130 IPR002885 -
Mepo6g01472 500 NCBIfam pentatricopeptide repeat 199 231 IPR002885 -
Mepo6g01472 500 Gene3D Tetratricopeptide repeat domain 192 401 IPR011990 GO:0005515
Mepo6g01472 500 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 437 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01472 Mepo-Chr6 16043659 16045345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01472 69 500 Glycoside Hydrolase AT3G49170 38.269 7.83e-100 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01472 - - gmx:100788229 806.208