Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01438 ATGCTCGGAGCTCAAAATATGTTAGCTTTGAACAAAGAAGTGGTACTTCTCGTTCATCAATATCTTGAGGAAGAGGGTTTCAAGGAAACCATGCGAATGCTGGAGAAGGAATCAGGTGTATTCTTCGATTTGAAGTACTTTGAAGAGAAAATTCTTGCTGGAGAATTTGATGAAAGTGAGAAGTACCTCAGTGCCTTTACCAATATCACTGACAGTCCAAGCTCCATGAAAATGTTTTTTGAGATTAGGAAGCAAAAGTATCTTGAAGCCTTGGACAGGGATGACAAAGCGAAGGCCGTTGAAATCCTGGTCAAAGACTTGCAAATATTTTCAACATATGATGATGTTCTCTACAGTGAAATAACACAACTCATAACCCTTGACAACTTCAGGGAGAACGTAGAATTATCACATTATAAAGATGTTAAATCAATTAGACTCACATTGATGGAAGAGCTCAAGAAAATGATTGACATTAACCTCATATTGAGGAAAAAGATTATACTTCCTTCGTTGCGGTCGTCGCGGTTGCGATACCTGGTTAATCAAGGATTGAATTGGCAGCATCACCTATGCAAGTATCCAAAGCCAAATCCCGAAATCACAACTTTGTTGATCGACCATACTTGTCCTTCGCCTCAACAAGGATTTTGCATGCCTACTATGCTTCCTGCTACAGATGCTGCTCAACTTCCCCCCGCCCCTGCATGGATGGTGAATGGAAATCCTTCATCGTCTTCACAATCACCTGCTACACTTGCAGCTTCCTCATTGGCCGGTCCTTCAAATCAAGGCTCTATTTCGAACCTTTCATTAACACTGAATACTCCGCTTCCACCGATAGATAACCAAAGTAATGACCGTGATCAACAATCAAGACGGTTTCTGGCTGCAGAATCGGTTGAAGAGGTCGCATCTACCGTTACACCACAACCAACAACTCGGTTGTTTGATGAAATTCCCAGAACAGTTGTTTGGGAATTAAATCAGGGATACACTGTAAAGAGCATGGAGTTTCATCCTACATCTCATTCTATACTAGCTGTTGGTTGTGAAAATGGTGAAATTTCACTATGGGATGCAATGATTAAAGAGAAGCTGATAGCGAAATCTTTCAATATATGGAATCTTTCTAATTGTTCCGTTGAATTTCAGGCTGCAAATCCGAAAGAATTGTCTGTCATTCGTGTAGCATGGAGCCCGGATGCTAGTTACATTGGGGTTGCTTTTGCAAAGCATTTGATTCATTTGTATGCCTATCAAGTTCCTGATGGTCTACAGCAGCATTTGGAGATTGATGCTCATGATGGTGGTGTTAATGACTTGGCATTTTCATTTCCGAAAAATCAGCTATGTGTTGTAACTTGTGGAGATGATAAGTTAATTAAGGTATGGGATTTGAATGGAGAGAAGATCTTTAGCTTTGAAGGTCATGTAGCTCCTGTTTATTCGGTTCTTCCTCACTCGAAGCGAAATCTCCAGTTCTTACTTTCTATATCAATTGACGGAAAAATTAGACTCTGGTTGTATGAGAACGAGAGCTTCCAGGTGGAATACGACACTCTCGGAAAGTGTAGCACTACACTGATCTATAGTGCTGATGGAACTAGATTGTTTTCATGTGGGACAACTACAGAGGGAGATTGTTTCTTATCTGAGTGGGATGAGGATGATGGTGTAGTAAAAAGAACTTATTCTGGGCTTAGAACCAATTCTGCTGGCATGGTGCAATTCGACACTGCAAAGAGTCGATATTTGGCGGTTGGTGTAGATAACCAAATTAAGTTTTGGGATGTGGACATTATTAATGTTCTAACTAGTACAGATGCTGATGGTGGTCTTCCTAGTCTACCTCGCTTGACGTTCAATAAGGAAGGAAATCTGCTTGCTGTTTCTACAGCAGATGGTGGTTTTAAAGTCCTTGCTAACGTCAAGGGTATCAAATTCTTGGGCGGCATTGAAGCAAATAAAGCACCTATTGATGTAAAGATGGAAGAATTTTTTGCTATGGCTAGTAACAACGAGAATAATAGAAATTCAGATGATAGTAATTCAAATGATGTAAAGGAAATCACTCTTCCTATTCAGTGTCAGGTAGTTACTATGCCGGAGACTGTGGGTCCAAGTAACAAGGCTATTCGTCTTGTTTACACAAATGATGGAGATGGTCTTCTTGCTCTCGGTTCAAAAGGGATTCAAAAGTTGTGGAAATGGGAACCTACTCAATTGAATCGTAGTGGAAAGGCGACTGCAAGTGTTGCTCCTGAACATTGGACACCGAAGACTGGTGTTTTTTTGAAGAACGATGTCCCAAACAATTCTGATTCAGCGATTCCTTGCTTAGACATCTCCAATAATGATTTCTATGCCATGTCTTCATGCGGAGGAATAGTTTCAATATTCAACATGGTGAAATTTAAAGTAATGTCTGAATTTTTGCCACATTCACCAGCTGCAACATTCCTTGCGTTTAACCCTGTAAATAATAACATCGTTGCGATTGGAAGGGAAGATGCGGATATTGATATTTTTCTGCACACTAAGCTTATGGAGAAACTAAGGGGTCACCAAAAACACATCACTGGCATAGTTTTTTCGCCTCGACTGAATACAATGGTAACTTCGGATGCTGATGTTCAGCTTTTCTCTTGGTGCACGACGACATGGGTTAAGAAGAAACAAGTGTCAATCCAAATGCCAGGTGGTGGAAATGCACCTGCAGGTGACACTAAAGTTCAATTTCACATTGATCAAGTGAAGTTGCTGGTATGCCATGAGACACAGATAGCGATATACGATGCTTTGAAAATGGAATTGATTCGCCGGTGGCTGCCACAAGGAGGATTGTCTGGTGCCATATCCTCTGCAACTTATTGTTGCAATGGTGAAGTAATTTATGCTGCTTTTACTGATGGAAACATTGGAATATTTAGTGCTGACAACCTCATACTACGATGTCGCATTTCTTCGTCTTCATACCTATTTCAGACTCCATCAAACAGTCAAAATGTGTACCCTCTTGTTATCACAAGACATCCACAAGATCCCTATCAATTTGCAATTGGACTATCAGATGGGTCTGTTACAATTATGGAGCCCAAAAAGTATGAAGCATGGTGGTGGTAA 3126 0.4056 MLGAQNMLALNKEVVLLVHQYLEEEGFKETMRMLEKESGVFFDLKYFEEKILAGEFDESEKYLSAFTNITDSPSSMKMFFEIRKQKYLEALDRDDKAKAVEILVKDLQIFSTYDDVLYSEITQLITLDNFRENVELSHYKDVKSIRLTLMEELKKMIDINLILRKKIILPSLRSSRLRYLVNQGLNWQHHLCKYPKPNPEITTLLIDHTCPSPQQGFCMPTMLPATDAAQLPPAPAWMVNGNPSSSSQSPATLAASSLAGPSNQGSISNLSLTLNTPLPPIDNQSNDRDQQSRRFLAAESVEEVASTVTPQPTTRLFDEIPRTVVWELNQGYTVKSMEFHPTSHSILAVGCENGEISLWDAMIKEKLIAKSFNIWNLSNCSVEFQAANPKELSVIRVAWSPDASYIGVAFAKHLIHLYAYQVPDGLQQHLEIDAHDGGVNDLAFSFPKNQLCVVTCGDDKLIKVWDLNGEKIFSFEGHVAPVYSVLPHSKRNLQFLLSISIDGKIRLWLYENESFQVEYDTLGKCSTTLIYSADGTRLFSCGTTTEGDCFLSEWDEDDGVVKRTYSGLRTNSAGMVQFDTAKSRYLAVGVDNQIKFWDVDIINVLTSTDADGGLPSLPRLTFNKEGNLLAVSTADGGFKVLANVKGIKFLGGIEANKAPIDVKMEEFFAMASNNENNRNSDDSNSNDVKEITLPIQCQVVTMPETVGPSNKAIRLVYTNDGDGLLALGSKGIQKLWKWEPTQLNRSGKATASVAPEHWTPKTGVFLKNDVPNNSDSAIPCLDISNNDFYAMSSCGGIVSIFNMVKFKVMSEFLPHSPAATFLAFNPVNNNIVAIGREDADIDIFLHTKLMEKLRGHQKHITGIVFSPRLNTMVTSDADVQLFSWCTTTWVKKKQVSIQMPGGGNAPAGDTKVQFHIDQVKLLVCHETQIAIYDALKMELIRRWLPQGGLSGAISSATYCCNGEVIYAAFTDGNIGIFSADNLILRCRISSSSYLFQTPSNSQNVYPLVITRHPQDPYQFAIGLSDGSVTIMEPKKYEAWWW 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01438 1041 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 40 98 IPR006595 -
Mepo6g01438 1041 Pfam WD domain, G-beta repeat 432 466 IPR001680 GO:0005515
Mepo6g01438 1041 SUPERFAMILY WD40 repeat-like 710 1035 IPR036322 GO:0005515
Mepo6g01438 1041 Gene3D - 704 1039 IPR015943 GO:0005515
Mepo6g01438 1041 ProSitePatterns Trp-Asp (WD) repeats signature. 453 467 IPR019775 -
Mepo6g01438 1041 SMART WD40_4 936 978 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 468 509 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 846 883 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 321 360 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 425 466 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 377 419 IPR001680 GO:0005515
Mepo6g01438 1041 SMART WD40_4 558 598 IPR001680 GO:0005515
Mepo6g01438 1041 MobiDBLite consensus disorder prediction 239 286 - -
Mepo6g01438 1041 SMART ctlh 40 98 IPR006595 -
Mepo6g01438 1041 MobiDBLite consensus disorder prediction 234 293 - -
Mepo6g01438 1041 SMART Lish 10 42 IPR006594 GO:0005515
Mepo6g01438 1041 Gene3D - 523 650 IPR015943 GO:0005515
Mepo6g01438 1041 ProSiteProfiles Trp-Asp (WD) repeats profile. 853 884 IPR001680 GO:0005515
Mepo6g01438 1041 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 7 1040 IPR027728 GO:0006355
Mepo6g01438 1041 SUPERFAMILY WD40 repeat-like 308 640 IPR036322 GO:0005515
Mepo6g01438 1041 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Mepo6g01438 1041 Pfam LisH-like dimerisation domain 12 40 - -
Mepo6g01438 1041 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 475 IPR001680 GO:0005515
Mepo6g01438 1041 Gene3D - 236 521 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01438 Mepo-Chr6 15638461 15668676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01438 413 626 Miscellaneous Gene Families AT5G08390 23.041 6.54e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01438 - - psat:127073516 1203.35