Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00613 ATGGAAAACAAAATTTTTAATTCTAAGAATCAAGTGCAACCTGTAGAAGATTTATCTGCTAGGGTTTCTAGTTTCTCCCTTGGTGATCATCATCATATATCCAATTCCTATTCTCCTTTGGATGATAGGGTGGATGGTGGTAATATGAGGTATCATCATGTTACTAAAGAAAATAGTGATTCTTTGTCTTCTGTTAGCGCTGAAGAGAATAGTATGAATTTATCTAGGTTATATCCTGAATTACCTGAAGAATCATTTGAAAGGAATGAAGGGGATATGGAGTCTTTAGCTGATATTCAGAATCAGAGAAAGTACTTCTGTTATGATGCTCCGTTGAATGAAGATACTGGAGTTTGGATACCGGTCTCAGTTCCACCTATGTTGGAAGATGATCATAAAGAATGGGAAAAAGGGTTTCATTCAAATGGTGGTTTTTTTCCCGACGATGATATGGGCTGGAATCAATATGTTGGAGGAGAAAAGGAATTGACTATGTGGGAAGTGTTGGTAGAAATTTTACTTGCAGCTAAGGGAAAAGTGTCTTCTTTGGCATCAGGAGATATTCATACATATAGCTTTTCATGGCTAACAAGCCATGTACTTGAACAAGCTTGGAGAGAGATGGCGCAAACTCTAACAGAAGCTAGCTTTGGTAATGTGAAGGAACTAATAGAAGCCGAACCTCCGAAATGGTTGGCAGATAGTGCTGCTGCTGCTTGTATGCTTTGTGGCGTGAGGTTTCATCCCATCATGTGTTCCAGGCATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAATGTTCTAAAGGGCGGAGCTTGATGCCATCAAAGTTCCGAGTTTCTGACCCCCAAAGAGTCTGCGATGTATGCTGTGTTCGACTTGAGTCTATACAGCCTTATTTGATGCATAATGTAAGTAATGCTTCTCAGTTGCCAACTCACGACCTGACAGATCTCAGCACTTTGAGATCATGGGTTAATTTCCCTTGGGGACAGACCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGTCTTATAATCAGATAGGTTTATTAAAGCCTGAAAAGACAATTCCAGATGCCATTCTTAGGCAAGCAAAAGGCCTTGCAATTATCACTGTGGTCAAAGTAGGAGTGGTAGTTACTTATAATATTGGAACAGGGATTGTGGTTGCGCGTAGGGAAGATGGTTCGTGGTCTCCACCATCCGCTGTTTCGACATTCGGAGTGGGGTGGGGGGCTCAGGCTGGAGGGGAGTTAACAGATTTCATCATTGTTCTGAGAACAAATGAAGCTGTCAAGACATTTAGTGGTAATGCACATGTTTCACTTGGAGCTGGTATGAGTGCTGCAGTTGGCGTTGTTGGAAGGGCAGTTGAAGCTGATGTTCGAGCTGGCGATGGTGGCTATGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGTTGTTCACTTGAAGGCAGTATTGTCACCACTCGCACACATGAAAATTGTCGTTTTTATGGCAGCCAGTCTTTAAATGCAACAGATATACTTCTTGGCTCCTTGCCTAGGCCACCTGCTGCAGCTATTCTCTACCGTGCTCTTGCAGATTTGTATGTGAAGATTGATGGTTATTGA 1638 0.4188 MENKIFNSKNQVQPVEDLSARVSSFSLGDHHHISNSYSPLDDRVDGGNMRYHHVTKENSDSLSSVSAEENSMNLSRLYPELPEESFERNEGDMESLADIQNQRKYFCYDAPLNEDTGVWIPVSVPPMLEDDHKEWEKGFHSNGGFFPDDDMGWNQYVGGEKELTMWEVLVEILLAAKGKVSSLASGDIHTYSFSWLTSHVLEQAWREMAQTLTEASFGNVKELIEAEPPKWLADSAAAACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLMPSKFRVSDPQRVCDVCCVRLESIQPYLMHNVSNASQLPTHDLTDLSTLRSWVNFPWGQTMEYEIYKATNTIKSYNQIGLLKPEKTIPDAILRQAKGLAIITVVKVGVVVTYNIGTGIVVARREDGSWSPPSAVSTFGVGWGAQAGGELTDFIIVLRTNEAVKTFSGNAHVSLGAGMSAAVGVVGRAVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTHENCRFYGSQSLNATDILLGSLPRPPAAAILYRALADLYVKIDGY 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00613 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 307 IPR013083 -
Mepo6g00613 545 Pfam Las17-binding protein actin regulator 412 536 IPR007461 -
Mepo6g00613 545 CDD SYLF_FYVE 337 538 - -
Mepo6g00613 545 SUPERFAMILY FYVE/PHD zinc finger 229 307 IPR011011 -
Mepo6g00613 545 Pfam FYVE zinc finger 230 295 IPR000306 GO:0046872
Mepo6g00613 545 PANTHER SH3YL1 PROTEIN 195 543 - -
Mepo6g00613 545 SMART fyve_4 226 297 IPR000306 GO:0046872
Mepo6g00613 545 FunFam Zinc finger family protein 220 302 - -
Mepo6g00613 545 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 234 296 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00613 Mepo-Chr6 6276852 6281947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00613 231 314 EF-hand Containing Proteins AT3G14270 33.708 3.22e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00613 K20523 - gmx:100813648 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00613 6 6276852 6281947 Mepo6g00613 6 6276852 6281947 ECH