Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g00419 ATGAATTGGAAGCTTCTTCGAAGCATCACAACCAACATTGGAAGCAGAAACAGATCATACTACACCAGCAAGACCAAGAAACCGAGCCTCTACTCCGTAATCAGTCCACTCGGAAATCAAACCACAAGCGTTGCTCCTCAGCTCGATGATTGGGTCTACAAAGGGAACAAGGTCAGCGTTGGTGAGCTTCAGCGCATTGTTCGTGATCTTCGCAAGCGTAGTAGATTCACACAAGCTCTCCAGGTGTCTGAGTGGATGAATAAGAATGGTGTGTGCGTATTTTCTCCGGTTGAACATGCGGTGCATTTGGATCTTATTGGAAGGGTTCATGGTTTTTATGCTGCAGAAACCTATTTTAATAGCTTAAAGGATATAGAAAGAAATGAGAAGACACACGGTGCTCTTTTGAATTGCTATGTACGTCAGCGTCAAGTCGATAAGTCTCTATCCCATTTGAAGAAAATGAAGGAGTTGGGGTTTGCTTTGTCGTCTCTAACTTATAATAACATTATGTGTCTGTATACAAATATAGGAGAGCATGAGAAAGTTCCTGGCGTGTTTAATGAGATGAAGGAAAACCATGTTTTGCCGGACAACTTTAGCTACAGAATCTGTATAGGTTCTTATGGTGTGAGGTCAGACATTGATGGAATGAAGACAATATTGAAAGAGATGGAGAGTCAACCACACATTGTGATGGACTGGAACACGTATTCTGTCGTGGCCAATTTCTATATAAAAGCAGAACTTTCAAGTGAAGCAATTGATGCTCTGAGGAAATGTGAGAAGAGGCTGGATGAGAAAGATGGAGAGGGTTATAACCATCTTATCTCTCTCTACGCTCGTCTTGGAAAAAAGAATGAGGTCCTAAGACTATGGGATATGGAAAAAAGTGCTTGCAAGAGGTGCCTAAACAGGGATTTTATAACCATGTTAGAATCTCTGGTAAAGCTTGAGGAGTTTGATGAAGCTGACAAAATACTCAAGGAATGGGAATTCTCTGGTAACTGTTATGATTTTGGAGTTCCAAATGTGGTAGTCGTTGGGTACTCTGAAAAAGATTTTCCTGAGAAAGCAGAAGCCATACTTCAAGATATATGGAAGAAGGGAAAGTACACTGATACAAACTCTTGGATTCTAGTCGCAGGTCGATACTTGCTTAAAGGTGAGATGGGGAAAGCATTGGGGTGCTTGAAAACTGCCGTCTGTTTGTATCCGGAAAATAAAAAAAGGAAGCCAAACCACAGGGTGATTTCTAGTATATATAGTTGGATTGGTGATAATGCTTGTGTTGAAGATGCAGAAGCTTTGGTGAGCTTATTGAAAAAATTCCAAAAGAATAGACACATGTATCATTCCCTGCTCAAGGCTTATGTACGGGCTGATAAAGAAGTGGATGGGGTCTTGGACCGCATGAAAGAAGATAACATTGACGAAATTGGAAAAACTACAGAAATTGTCGACATGAAGAAGGAAGGAAATTTGTAA 1488 0.4073 MNWKLLRSITTNIGSRNRSYYTSKTKKPSLYSVISPLGNQTTSVAPQLDDWVYKGNKVSVGELQRIVRDLRKRSRFTQALQVSEWMNKNGVCVFSPVEHAVHLDLIGRVHGFYAAETYFNSLKDIERNEKTHGALLNCYVRQRQVDKSLSHLKKMKELGFALSSLTYNNIMCLYTNIGEHEKVPGVFNEMKENHVLPDNFSYRICIGSYGVRSDIDGMKTILKEMESQPHIVMDWNTYSVVANFYIKAELSSEAIDALRKCEKRLDEKDGEGYNHLISLYARLGKKNEVLRLWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEWEFSGNCYDFGVPNVVVVGYSEKDFPEKAEAILQDIWKKGKYTDTNSWILVAGRYLLKGEMGKALGCLKTAVCLYPENKKRKPNHRVISSIYSWIGDNACVEDAEALVSLLKKFQKNRHMYHSLLKAYVRADKEVDGVLDRMKEDNIDEIGKTTEIVDMKKEGNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g00419 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Mepo6g00419 495 Gene3D Tetratricopeptide repeat domain 306 493 IPR011990 GO:0005515
Mepo6g00419 495 PANTHER OS12G0527900 PROTEIN 22 479 - -
Mepo6g00419 495 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 271 - -
Mepo6g00419 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Mepo6g00419 495 Pfam PPR repeat family 164 207 IPR002885 -
Mepo6g00419 495 SUPERFAMILY TPR-like 241 409 IPR011990 GO:0005515
Mepo6g00419 495 Pfam PPR repeat 131 160 IPR002885 -
Mepo6g00419 495 Pfam PPR repeat 273 294 IPR002885 -
Mepo6g00419 495 Gene3D Tetratricopeptide repeat domain 212 301 IPR011990 GO:0005515
Mepo6g00419 495 Gene3D Tetratricopeptide repeat domain 39 211 IPR011990 GO:0005515
Mepo6g00419 495 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Mepo6g00419 495 NCBIfam pentatricopeptide repeat 166 198 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g00419 Mepo-Chr6 4311669 4313981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g00419 29 475 EF-hand Containing Proteins AT1G02150 30.736 3.81e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g00419 - - lja:Lj6g3v2043070.1 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00419 6 4311669 4313981 Mepo6g00419 6 4311669 4313981 ECH