Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01673 ATGGTACTTCTTCAATGTCCTTGTTGTTGCTACACACAAAACCAACAACAACACCAAAAAACACAACCTCATTCTCATGATCACATTCATTCAGAATCATCAACTTCTTCATCTCTTTCTTCACAACCAAGTTTACCTTCTGTTCCTTCTCTCACTTCACAACAATCTCAAAGCACACATCACAAACTTCTAACAACAATCAATGGTCACTCTTCCCCTATCTCCTCCCTTGCTTTACACTCTAAATTTCTCTTTAGTGGTTCTTCCAATAGTGAAATAAGAAGATTTGACAAAGACCCTTTTGCTCTTCAAGCTTCAAACAATATCAATAACTTGGTAGCAATCAGTAATGGATCAAAATCAACCATTAAGTCAATGATTGTTGTTAATGATATGTTATTCAGTGCTCATCAAGATCACAAAATCCGGGTTTGGAAAATCGAAACAACGATGACTAGTAATAGTACTAATCAAGAACAGAAGTTATTTAAGTGCATAGCAACACTTCCAACATTCAATGATCGTTTTTCGAAGCTTTTTTCATCGAAAAATTACGTGGAAGTTCGGAGACATAAGAAGTATACATGGGTGAATCATATTGATGCTGTTTCTTCTCTCGCTGTTTCGAAAGATGGATTGTTTCTTTACTCGGCTTCGTGGGATAGAACATTCAAAATTTGGAGAGTTTCAGATTTCAAGTGTTTAGAGTCAGTGAAAAATGCACATGAAGATGCAATTAATGCAATTGTTGTTTCATCTTCTGGGGTTGTTTATACAGGCTCAGCTGATAGAAAGATCAAAATCTGGAAGAAAAAAAATCATGAAGAAGATGAGAAAATGAAAAGTAAAAGTAAAAAGAAAAAGCATTTTTTGGTTGGAACATTAGAGAAGCATAAATCAGCTGTGAATGCTTTAGCACTTAACAAAGATGGATCAGTTTTATATTCAGGTGCTTGTGATAGATCAATTTTAGTTTGGGAAAAAAGTAATAGCATTATTCGAAATTGTTCTGGACTGGACCAAGACCCCGACGACGAAAATATGGTCCTAGTTGGTGCCCTAAGAGGGCATACTAAGGCTATATTGTGTTTGGTTGTGATGGATGATTTGGTGTGTAGTGGATCAGCTGATAATAGTGTTAGATTATGGAAAAGAGGAATTGATGCAAAAAGTTATGCATGTTTGGCTGTTTTGCAAGGTCATAGAAAAGCTGTTAAGTGTTTGGCTATAGCAGATGATTCCAAAAGTGGTAAAAATGGTGGGGTTGATGATAATGGTAGTTCTTATCTTGTTTACAGTGGTAGTCTTGATTGTGATATCAAAGTTTGGCAAATACGCGTTCCATTGATTTGA 1353 0.3562 MVLLQCPCCCYTQNQQQHQKTQPHSHDHIHSESSTSSSLSSQPSLPSVPSLTSQQSQSTHHKLLTTINGHSSPISSLALHSKFLFSGSSNSEIRRFDKDPFALQASNNINNLVAISNGSKSTIKSMIVVNDMLFSAHQDHKIRVWKIETTMTSNSTNQEQKLFKCIATLPTFNDRFSKLFSSKNYVEVRRHKKYTWVNHIDAVSSLAVSKDGLFLYSASWDRTFKIWRVSDFKCLESVKNAHEDAINAIVVSSSGVVYTGSADRKIKIWKKKNHEEDEKMKSKSKKKKHFLVGTLEKHKSAVNALALNKDGSVLYSGACDRSILVWEKSNSIIRNCSGLDQDPDDENMVLVGALRGHTKAILCLVVMDDLVCSGSADNSVRLWKRGIDAKSYACLAVLQGHRKAVKCLAIADDSKSGKNGGVDDNGSSYLVYSGSLDCDIKVWQIRVPLI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01673 450 Gene3D - 48 177 IPR015943 GO:0005515
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 327 IPR001680 GO:0005515
Mepo5g01673 450 CDD WD40 63 444 - -
Mepo5g01673 450 Pfam WD domain, G-beta repeat 195 227 IPR001680 GO:0005515
Mepo5g01673 450 Pfam WD domain, G-beta repeat 233 270 IPR001680 GO:0005515
Mepo5g01673 450 Pfam WD domain, G-beta repeat 351 384 IPR001680 GO:0005515
Mepo5g01673 450 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Mepo5g01673 450 Pfam WD domain, G-beta repeat 393 443 IPR001680 GO:0005515
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 384 IPR001680 GO:0005515
Mepo5g01673 450 FunFam BnaA09g28200D protein 186 274 - -
Mepo5g01673 450 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 22 446 IPR045182 -
Mepo5g01673 450 MobiDBLite consensus disorder prediction 21 61 - -
Mepo5g01673 450 PRINTS G protein beta WD-40 repeat signature 215 229 IPR020472 -
Mepo5g01673 450 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Mepo5g01673 450 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 230 - -
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 384 - -
Mepo5g01673 450 SUPERFAMILY WD40 repeat-like 60 445 IPR036322 GO:0005515
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 279 IPR001680 GO:0005515
Mepo5g01673 450 MobiDBLite consensus disorder prediction 32 61 - -
Mepo5g01673 450 SMART WD40_4 60 97 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 189 228 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 391 444 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 109 146 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 288 327 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 231 270 IPR001680 GO:0005515
Mepo5g01673 450 SMART WD40_4 347 384 IPR001680 GO:0005515
Mepo5g01673 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Mepo5g01673 450 Gene3D - 178 448 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01673 Mepo-Chr5 17877164 17878634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01673 117 387 Acyl Lipid Metabolism Gene Families AT3G18860 23.183 3.48e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01673 - - cam:101511687 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01673 5 17877164 17878634 Mepo5g01673 5 17877164 17878634 ECH