Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01615 ATGCTATGCTCTATAATCCGTTTGCGCCGTAACACTCCAACAACCTCACTCTTTCTCCACGTCGGTAACCGTTTCAGTTTCTCATCCTCCACCACCTCCTCCTTCTCCGCCGCCGCCATGGCGGTCCCTCACCCCAAAGACGAATCCTATCTAGCCGCGACAATCCCAAAACGCATCCAAATCTTCGAGGCGCTTCAAGCTGAACAACAGACTCGCCGTCTTTCACTCTCTCCCGATCCGGTTAAGGTTACTCTTCCCGACGGAAACGTGAAGGAAGGGAAGAAATGGCAGACGACTCCGTTTGATATTGCGCGTGAGATTTCGAAGAATTTGGCGAATAATGCTCTTATTGCTAAGGTTAATGGTGTTCTTTGGGATATGAATCGGCCTCTTGAAGAGGATTCATCGCTGCAGTTGTTTAAGTTTGATGATGATGAAGGGAGAGATACTTTTTGGCATTCCAGTGCTCATATTCTTGGACAGTCTCTTGAGACGGAGTATGGATGCAAGCTTTGCATTGGACCCTGCACTACTAGAGGAGAGGGATTCTATTATGATGCGTTTTATGGTGACTTGGGTTTGAATGATGATCACTTTAAACAAATTGAAGCTGGAGCGTTGAAAGCTGTTGCGGAAAAACAACCCTTTGAGCGCATTGAAGTGACACGCGATCAGGCTCTTGAGATATTTTCTGATAATAAGTTTAAGGTCGAAATTATCAATGATCTGCCCGCTGATAAGACTATAACAGTGTACAGATGTGGACCCCTCGTTGATTTGTGTCGAGGACCTCATATTCCTAATACATCCTTTGTCAAAGCAATTGCATGTTTGAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGTATATCTTATCCTGACAATAAGAGTTTAAAGGAATATTTGCATCGGCTTGAAGAGGCTAAAAAGTACGATCATAGGATTTTAGGAGTGAAACAGGAGCTTATTTATCATCATGAGTGGAGCCCGGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGGATCTACAACAAACTCATGAACTTCATTCGAGATCAGTACAGAGACCGGGGCTATCAAGAGGTTATATCACCCAATGTCTTCAACATGGACCTGTGGGTGCAATCTGGTCATGCGGCAAATTATAAAGAGGATATGTTTGTCTTGGAGATCGACAAACAAGAGTTTGGTTTGAAGCCGATGAATTGCCCAGGGCACTGCTTGATGTTTAAACACCGGGTTCGATCATATAGAGAACTTCCTCTCCGTTTTGCTGATTTTGGGGTTTTGCATCGAAATGAGGCCAGTGGTGCGCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACACATTTTCTGTCGTGAGTCCCAGATAAAAGATGAAGTCAGAAATGCCTTGAACTTCATCGATCATGTCTATAAAATATTTGGTTTCTCATATGAACTGAAGCTTTCAACGAGACCAGAGAAATACCTTGGAAATATTGAAACGTGGGAGAAGGCTGAAGCTTCTCTCAAGGAAGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGCAGGAAGTTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACATAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGGCAAGCAATTCTCTGCCCCGTCTCGGAGAAATCACAAGCGTATGCACTGCAGGTACGAGATCGGATCCACCAAGCAGGATATCACGTAGATGCTGATACAACTGACAGGAAGATTCAGAAGAAGGTAAGAGAAGCTCAGTTAGCACAATACAACTACATCTTGGTTGTTGGCGAAGAGGAAGCTAAGACAGGACAGGTGAGCGTACGAGTCAGGGATAAGGCAGACCACAGCGTCATGACTATTGAGAACCTGCTCGAACACTTCAAAGACGAGGTTGACGCTTTCCACTGA 2148 0.4465 MLCSIIRLRRNTPTTSLFLHVGNRFSFSSSTTSSFSAAAMAVPHPKDESYLAATIPKRIQIFEALQAEQQTRRLSLSPDPVKVTLPDGNVKEGKKWQTTPFDIAREISKNLANNALIAKVNGVLWDMNRPLEEDSSLQLFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDNKSLKEYLHRLEEAKKYDHRILGVKQELIYHHEWSPGSWFFLPHGARIYNKLMNFIRDQYRDRGYQEVISPNVFNMDLWVQSGHAANYKEDMFVLEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALNFIDHVYKIFGFSYELKLSTRPEKYLGNIETWEKAEASLKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALQVRDRIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDKADHSVMTIENLLEHFKDEVDAFH 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01615 715 Gene3D - 144 301 - -
Mepo5g01615 715 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 401 608 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo5g01615 715 SMART tRNA_SAD_4 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mepo5g01615 715 SUPERFAMILY TGS-like 81 141 IPR012676 -
Mepo5g01615 715 CDD TGS_ThrRS 81 146 - -
Mepo5g01615 715 Gene3D Bira Bifunctional Protein; Domain 2 302 610 IPR045864 -
Mepo5g01615 715 SUPERFAMILY ThrRS/AlaRS common domain 143 320 IPR018163 GO:0000166
Mepo5g01615 715 FunFam Threonine--tRNA ligase mitochondrial 1 612 715 - -
Mepo5g01615 715 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Mepo5g01615 715 CDD ThrRS_core 322 618 IPR033728 -
Mepo5g01615 715 CDD ThrRS_anticodon 618 708 IPR047246 -
Mepo5g01615 715 FunFam Threonyl-tRNA synthetase, mitochondrial 145 302 - -
Mepo5g01615 715 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 347 613 IPR006195 -
Mepo5g01615 715 Gene3D - 79 140 IPR012675 -
Mepo5g01615 715 Pfam Anticodon binding domain 620 709 IPR004154 -
Mepo5g01615 715 NCBIfam threonine--tRNA ligase 152 710 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 SUPERFAMILY Class II aaRS and biotin synthetases 322 605 IPR045864 -
Mepo5g01615 715 FunFam Probable threonine--tRNA ligase, cytoplasmic 436 611 - -
Mepo5g01615 715 FunFam Threonine--tRNA ligase, cytoplasmic 79 140 - -
Mepo5g01615 715 Gene3D - 611 715 IPR036621 -
Mepo5g01615 715 PANTHER THREONINE-TRNA LIGASE 52 714 - -
Mepo5g01615 715 FunFam Threonine--tRNA ligase mitochondrial 1 302 430 - -
Mepo5g01615 715 ProSiteProfiles TGS domain profile. 79 141 IPR004095 -
Mepo5g01615 715 Hamap Threonine--tRNA ligase [thrS]. 146 713 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 Pfam TGS domain 81 141 IPR004095 -
Mepo5g01615 715 PRINTS Threonyl-tRNA synthetase signature 586 599 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 PRINTS Threonyl-tRNA synthetase signature 542 570 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 PRINTS Threonyl-tRNA synthetase signature 441 464 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 PRINTS Threonyl-tRNA synthetase signature 408 436 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 PRINTS Threonyl-tRNA synthetase signature 613 625 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Mepo5g01615 715 SUPERFAMILY Class II aaRS ABD-related 606 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01615 Mepo-Chr5 17145929 17157338 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01615 K01868 - gmx:100812652 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01615 5 17145929 17157338 Mepo5g01615 5 17145929 17157338 ECH