Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01556 ATGATGAGAAACACAAATTTTTCTCTACTCTTTTTTATGTCCTTGTTGGTGCTTATCTTCGTCACATTTTCTTCTGTGGATGCAAGGAACACTAACATGAAGAAAAAACTACACAAACATCACAAAAAATCACATCCTCTTCCTCATTATGATCCTCATCCAATTCAACCTAACACTTTTGATATTATGTCTTTTAATGCAAAGGGCAATGGAGTTTCTGATGATTCAGAGGCATTTCTAGCTGCATGGAAATGTGCATGCAAAGTTTCTGGTGCAACAATCAAAGTTCCAGAAAAACTCAAATTCCTCATTAAGCCTATTACTTTACAAGGCCCTTGTCTGCCTGATCTTACCCTTCAGATAGATGGAACAATATTGGCTCCTCCTGAAGTATCTTCATGGCCAAAGTCTAGTTTGTTTCAATGGATAAATTTTAAATGGGTGCAGAATTTCACTATCAAAGGCTATGGCATTATTGATGGTCAAGGTTCTAATTGGTGGAGCTCCTCAAATCTTTATGATATACAGAAAACTCACTCTAAACAAATTCCAAGCATGAAACCAACTGCTATAAGATTCTATTCTAGCAACTTTATAAAGATTAGAGATATCAAAATCAACAACAGTCCTCTATGCCATCTAAAATTTGACAACTCAAAGGGAATCAAAGTTGACAATATTACAATATCTTCCCCGGAAAATAGTCCAAACACTGATGGCATTCACTTGCAAAATACACAGGATGTAGAAATTCAACATTCTAATATTGGAACTGGAGATGACTGTGTGTCCATACAAACCGGTTGCTCCAATATTCATGTCCACCATATTAAATGTGGCCCTGGTCATGGCATAAGTTTAGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTCTCTGACATCATTGTTGAGGATATTTCAATGAAAAATACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCAATGGTATGGTTAAAAATGTAACATTTTCAAGAATCAAGGTCTATGGTGTTATGTATCCAGTAATGATAGACCAATACTATTGTGACAAACAAATCTGCAAGAACCAAACAGGAACAGTGATAATTTCTGGTGTCAAATTTGATCAAATAAGTGGCAGTTATTCAGTGCAGCCGGTCCACCTAGCATGCAGCAATTCCATCCCATGCACAGACGTTGATTTAACTGACATTCAGTTAAGACCTTCCCTTAATTATAGAGGTATGCAACAAGCTATGTGTTGGAACTCTTATGGAAAATCACAAGGTCAATTAGTACCTTCAAGTATTGATTATTGTTTGAGAAGTGGTGGTGGATTAATTAAGAGGATAGCAAAGTCACATGATAGTGTATGTTATAAATTGTTATAG 1380 0.3645 MMRNTNFSLLFFMSLLVLIFVTFSSVDARNTNMKKKLHKHHKKSHPLPHYDPHPIQPNTFDIMSFNAKGNGVSDDSEAFLAAWKCACKVSGATIKVPEKLKFLIKPITLQGPCLPDLTLQIDGTILAPPEVSSWPKSSLFQWINFKWVQNFTIKGYGIIDGQGSNWWSSSNLYDIQKTHSKQIPSMKPTAIRFYSSNFIKIRDIKINNSPLCHLKFDNSKGIKVDNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSDIIVEDISMKNTLYGARIKTWQGGNGMVKNVTFSRIKVYGVMYPVMIDQYYCDKQICKNQTGTVIISGVKFDQISGSYSVQPVHLACSNSIPCTDVDLTDIQLRPSLNYRGMQQAMCWNSYGKSQGQLVPSSIDYCLRSGGGLIKRIAKSHDSVCYKLL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01556 459 SUPERFAMILY Pectin lyase-like 54 433 IPR011050 -
Mepo5g01556 459 SMART pbh1 219 245 IPR006626 -
Mepo5g01556 459 SMART pbh1 246 267 IPR006626 -
Mepo5g01556 459 SMART pbh1 269 289 IPR006626 -
Mepo5g01556 459 SMART pbh1 328 349 IPR006626 -
Mepo5g01556 459 SMART pbh1 299 320 IPR006626 -
Mepo5g01556 459 FunFam polygalacturonase At1g48100 50 439 - -
Mepo5g01556 459 Pfam Glycosyl hydrolases family 28 92 406 IPR000743 GO:0004650|GO:0005975
Mepo5g01556 459 Gene3D - 52 439 IPR012334 -
Mepo5g01556 459 PANTHER - 58 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01556 Mepo-Chr5 16357774 16360909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01556 8 455 Glycoside Hydrolase AT3G26610 60.430 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01556 K01213 - gmx:100803027 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01556 5 16357774 16360909 Mepo5g01556 5 16357774 16360909 ECH