Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01379 ATGGCAAAAAAGAAACAGAATGAACCTCAACAAACCCCTCAAAACGACACCGTTTCAGCCCCTTCCAGCATTTTCAGCACGCTCTTCGCCAACGTGCCGGAACAAACCACCACCGCCGTCGATGCCGCTTCTCTATTTTCCGATGACAACCCCTATAAGAGAAAGCCTAACCAAACTCTCAGCCCTGAAAACGGTGTCGTTGATGAAAAGAAGAGGAAGAAGAACAAAGATAAAACTCCTGTGATTGATTCAAATCCCGCAATTGAAGTTTCAGAGAAGAAAGAGAAGAAGAAAAAGAAGATAAACGGTTCCGTCGAAGAGGAAGAGAAAGAAGAAGAGGTTAATTTGGATGGAGAAGGGGTTGGGGATAAGAAGAAGAAGAGGAAGAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTGAAGGAGGAGATAAAGACGAAAGCGTTGAGAAAGTTGGGAATAAGAGAAAAGTGCGTGATAATCCCGCGGATATGATGGTTACAAAAGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTACCTGTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGGTTTTTGGTGAAGTTGAATCTGTTAGGATTCGTTCTGTTCCATTACAAGATACTAAAAAGCCTAGAAAGGGAGCAATCCTTGCAAAGAAGATCAGTGAAACGGCTGAAAGCGTCAATGCTTACATCGTTTTCAAAACTGAGGAATCTGCTCAAGCTTCATTGTCCCACAACATGACTGTGGTTGATGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAAAAACTTAAAGGGGATACTGCTCCCCTTTATGATAATAAGAGAACTGTTTTTGTGGGCAATCTCCCGTTTGATGTGAAGGATGAAGAACTTTATCAGCTATTTTGTGGTATACCGAGTCTTGAATCAAGTATAGAAGCTATTAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCCTATGCGCTATTTAAAACAAGGGATGCTGCCCTTTCCATTGTTAGGAAACGGTCCTTAATGCTCCGAGATCGAGAATTGAGAGTCAGTATTGCAAAAGCAGATCCTAGTGCTACCCCATCTAAAAGGCCCTACTCTCCAGCAGCACGACCCAGTCATGGAAAACCAGATGCTACCCCATCCAAAAAACCATACTCTCAAGCAGCACAAGCTCGTAGTACCCCTGTAAGGAAGTTTTCAGGGGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCAAACAGAAAAACTACTGCTTCTTATCAGGGTCTGCGAGCTACCAAATCTGATGTCCCCAAGAAAAGTCACGGTGGAGAAAAGCCAAAAGAGCGCACAAAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAACATGCAGAAGGAAGGTGATACACCGAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGTACTCCTGATAGCTCTCGACGAGTTAAGAAAGTCCAAAAGAAGAGGTAG 1554 0.4305 MAKKKQNEPQQTPQNDTVSAPSSIFSTLFANVPEQTTTAVDAASLFSDDNPYKRKPNQTLSPENGVVDEKKRKKNKDKTPVIDSNPAIEVSEKKEKKKKKINGSVEEEEKEEEVNLDGEGVGDKKKKRKRDEVEKEWEEKKYGIVEGGDKDESVEKVGNKRKVRDNPADMMVTKEGFDDEDKLLRTIFVGNLPVKVKKKTLLKEFKVFGEVESVRIRSVPLQDTKKPRKGAILAKKISETAESVNAYIVFKTEESAQASLSHNMTVVDGNHIRVDRACPPRKKLKGDTAPLYDNKRTVFVGNLPFDVKDEELYQLFCGIPSLESSIEAIRVVRDPHLNVGKGIAYALFKTRDAALSIVRKRSLMLRDRELRVSIAKADPSATPSKRPYSPAARPSHGKPDATPSKKPYSQAAQARSTPVRKFSGASKSPSSSKNGSNRKTTASYQGLRATKSDVPKKSHGGEKPKERTKKRPTVAARKAKANMQKEGDTPKQAGSKRKFDSRTPDSSRRVKKVQKKR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01379 517 MobiDBLite consensus disorder prediction 481 508 - -
Mepo5g01379 517 Gene3D - 285 384 IPR012677 -
Mepo5g01379 517 SMART rrm1_1 297 373 IPR000504 GO:0003723
Mepo5g01379 517 SMART rrm1_1 186 275 IPR000504 GO:0003723
Mepo5g01379 517 Gene3D - 181 284 IPR012677 -
Mepo5g01379 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 377 IPR000504 GO:0003723
Mepo5g01379 517 MobiDBLite consensus disorder prediction 452 469 - -
Mepo5g01379 517 MobiDBLite consensus disorder prediction 406 448 - -
Mepo5g01379 517 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 276 460 - -
Mepo5g01379 517 MobiDBLite consensus disorder prediction 1 21 - -
Mepo5g01379 517 Coils Coil 91 111 - -
Mepo5g01379 517 MobiDBLite consensus disorder prediction 65 80 - -
Mepo5g01379 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 229 IPR000504 GO:0003723
Mepo5g01379 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 370 IPR000504 GO:0003723
Mepo5g01379 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 279 IPR000504 GO:0003723
Mepo5g01379 517 MobiDBLite consensus disorder prediction 376 517 - -
Mepo5g01379 517 SUPERFAMILY RNA-binding domain, RBD 178 285 IPR035979 GO:0003676
Mepo5g01379 517 MobiDBLite consensus disorder prediction 41 132 - -
Mepo5g01379 517 MobiDBLite consensus disorder prediction 117 132 - -
Mepo5g01379 517 CDD RRM1_RBM34 185 275 - -
Mepo5g01379 517 MobiDBLite consensus disorder prediction 88 107 - -
Mepo5g01379 517 SUPERFAMILY RNA-binding domain, RBD 292 397 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01379 Mepo-Chr5 14279640 14284939 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01379 K14837 - gmx:100784494 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01379 5 14279640 14284939 Mepo5g01379 5 14279640 14284939 ECH