Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01368 ATGGCGGTGAAATGCTTACTCCGCAGAAGACTTCACTTCCACCAAACAACTTTCTTCAGGTTCTATTCACCATCTTCTTCTGCATTAATGTTACAACCTGAAACTCCATTTTTCAACACCCCACTTCCCAAAACCACCACACAACTCCCTCGTTTAGTTTCCAAAGTCTTCAAAACCTTAAATTGGGGTGTTGCAAGAGAAATTAAATTCAAGGGTTGTGTTCAAATTCATGGTTTTGAAAACTCAATCAATTCCTTTAGTATCATCATTCACACTTATGCTTTAGCTGGTATGTCTTGGGAAGTTTTTATTTTGCTTAGAGATATTGTTACATTTTATAAGGAAGAGAATCGCGACGCGGGTGAATTGGTTTCACTTCTGCTTGATGTGGAAAAGTCTAATGTTGTGTTTGATATGCTTATCAAAGTTTTTGCTTCGAATTCTATGCTTGAACATGCTTTTAATGTTTTTGTTCGTGCTAAGGATGCTGGGATTGAGCCGAATATAATGTCGTGTAATTTCTTGTTGAAGTGTTCGGTTGATGATAATAGAGTGGATGATGTGAGATTTTTGTTTGAGGTTTTGATAAAGTTTGGTCCGAGGCCGAATATTCATACATATACAATCATGATGAATTTTTTTTGTAGAGGTGTTGGGTGTAGTGTTGATATTAGTCGTGCGTCTGAGATTTTAGGGAGGATTTTTAGGAGTGGAGAAACCCCGAATGTTGTTACGTATAGTACTTATATTAAGGGACTTTGTAAAGTTGGTTCACTTGGGGTTGCGTCACTTGGGGTTGCGCGGAGGTTAATTCAAAACTTGTGCCGTAAAAACCAGCCTCTCAATAACCATTGTTTTAATGCTGTCATATATGGATTGTGTCAAAGAGGTATAGTGGATGAAGCTTCAGAAGTTTTTAAAGAAATGAAGAACTCTGGAATATTGCCCGATGTTTATAGTTATAGCATTTTAATCGATGGATTTTGCAGGAAAGGTAGAGTAGACAAAGCTTCAGAAGTTTTTAAAGAAATGAGGAACTCTGGAATATTGGCCAATGTTTATAGTTATAGCATTTTAATCGATGGATTTTGCAGGGAAGGTAGAGTAGATAAAGCTTCAGAAGTTTTTACAGAAATGAAGAACTCTGGAATAGTGCCCGATGTTTATAGTTATAGCATTTTAATTGATGGATTTTGCAGGAAAGGTGATATGGATTCAGCCATAAAGTTTTGGGAAGAGATGACTAGCAATAATTTTTCTCCTTCTGCTTTTAATTATTGCAGTTTAATTAAGGGGTTCTACAAATCGAAACAATTCGCTAACGCATTGAAAATTTTTTGGGTCATGCAAAAACATGGCATGTGGCCAGATACAATCGCTTGCAATCACATTCTTAGTATTTACTGCAGGAAGCGCGATTTCAATAAAGCCTTCGCATTGTCGGAGAAATTTCAAGAAAATGGAGTTTACATCAACCCATATTCATATAATGAATTCATCCACAGGATTTGCAGAGAAAGTGTTCCAGAAAAGGCACTGCAGCTTTTGCCAGTAATGCTGAAGAGTAATGTACTTCCTGGAGTTGTTAATTATAGTACTCTTATATCATGCTTTGCCAAAAAGTCGAACTTTGAAAAGGCTTGGATGTTATTCACAAAAATGACAAAAGTAGGAATCACATTCAATGTCAAAACGTATACAATTCTTATTAACCTATTCATCCGTAATTGCGAAATGCCTACGGCATATAAATTATTTAAGGTAATGAAAAAAAGGGCTGTATATCCAGATCAGATAGCGTATACAAGTCTAGTTGCTGGTTTTTGTAATACTGGAGAAATGACTAAGGCACGGGCGTTAGAAAATGAAATGTTGCAAGAAGGCTGTTCACCAAATGTAGTTACTTATACTTGTTTCATTAATGTATATTTGAAGTTAAACAAGAACGATGAGGCTCATAAGTTGTATGAGGAAATGAAAGAAAGAGGTGTATATCCAGATCAGATCTTGTATACAATGCTAATTGCTGCCTTTTGTAATACTGGAGAAATGAATAGGGCAGAGGTGTTATTTGATGAAATGAAGCGGGAAGGCCGCTTTACACCAAATGTAGTTATTTATACTTGTTTGATTAATTTATATATAAAGTTAAACAAAAGAGATCAGGCTGAGAAGTTGTGTGAGGAAATGAGGGCAAAGGGTTTGTCCAGATTGAAGTGGAAGCTTGGAGGAAGGGCTAAGCAAGGCTGTGACAGGCGCTTCCAGGTCATTCTCCCGTTGAGGGGGAAGGTTCTAAATATTGAAAGAAGGGATGAAGCAACGTTGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGGTCTTGGATTTGGAGTGAAGATTTTCCAAGACCTTGGGCTTTTGCTCGCTGCTATATTTGAAGGGGCGTGGGCATTTTTGCTCACGACACAACAGAATCTGTTGGTCTCATCTTTCCTAAACAGTAATAGATTAGAGGCTGAGTTAGATGTGTTTGTTGATGTAGCCGTCATTGGCTGA 2538 0.3704 MAVKCLLRRRLHFHQTTFFRFYSPSSSALMLQPETPFFNTPLPKTTTQLPRLVSKVFKTLNWGVAREIKFKGCVQIHGFENSINSFSIIIHTYALAGMSWEVFILLRDIVTFYKEENRDAGELVSLLLDVEKSNVVFDMLIKVFASNSMLEHAFNVFVRAKDAGIEPNIMSCNFLLKCSVDDNRVDDVRFLFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDISRASEILGRIFRSGETPNVVTYSTYIKGLCKVGSLGVASLGVARRLIQNLCRKNQPLNNHCFNAVIYGLCQRGIVDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDKASEVFKEMRNSGILANVYSYSILIDGFCREGRVDKASEVFTEMKNSGIVPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGFYKSKQFANALKIFWVMQKHGMWPDTIACNHILSIYCRKRDFNKAFALSEKFQENGVYINPYSYNEFIHRICRESVPEKALQLLPVMLKSNVLPGVVNYSTLISCFAKKSNFEKAWMLFTKMTKVGITFNVKTYTILINLFIRNCEMPTAYKLFKVMKKRAVYPDQIAYTSLVAGFCNTGEMTKARALENEMLQEGCSPNVVTYTCFINVYLKLNKNDEAHKLYEEMKERGVYPDQILYTMLIAAFCNTGEMNRAEVLFDEMKREGRFTPNVVIYTCLINLYIKLNKRDQAEKLCEEMRAKGLSRLKWKLGGRAKQGCDRRFQVILPLRGKVLNIERRDEATLYKNEEIQNLILGLGFGVKIFQDLGLLLAAIFEGAWAFLLTTQQNLLVSSFLNSNRLEAELDVFVDVAVIG 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01368 845 SUPERFAMILY Type II DNA topoisomerase 743 795 IPR013760 GO:0003918|GO:0005524
Mepo5g01368 845 SUPERFAMILY HCP-like 386 736 - -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 182 263 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 46 181 IPR011990 GO:0005515
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 600 633 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 135 169 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 634 667 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 705 736 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 531 562 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 565 597 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 389 422 IPR002885 -
Mepo5g01368 845 NCBIfam pentatricopeptide repeat 670 703 IPR002885 -
Mepo5g01368 845 Gene3D - 741 800 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat 426 453 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat 600 629 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat family 631 680 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat family 456 505 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat family 359 400 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat family 526 572 IPR002885 -
Mepo5g01368 845 Pfam PPR repeat family 282 330 IPR002885 -
Mepo5g01368 845 Pfam Pentatricopeptide repeat domain 690 735 IPR002885 -
Mepo5g01368 845 Pfam Pentatricopeptide repeat domain 130 180 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Mepo5g01368 845 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 64 462 - -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Mepo5g01368 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 264 346 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 484 555 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 347 417 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 697 737 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 418 483 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 556 626 IPR011990 GO:0005515
Mepo5g01368 845 Gene3D Tetratricopeptide repeat domain 627 696 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01368 Mepo-Chr5 14179511 14185227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g01368 250 752 Glycosyltransferase AT1G05670 27.372 7.34e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01368 - - mtr:11434936 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01368 5 14179511 14185227 Mepo5g01368 5 14179511 14185227 ECH