Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g01164 ATGGCACCAGCTAGGGTTTTCGGAGCATTTGCCGGCAGAATGCTAATGGCGGCGGCGGCGAAAGGAGCGACGAAGAAGGCGGCCGCATCCGGCGGAGCTGCATCCACAACCGTCGTGAAGAAAACCGCGGTGAAGAAAACTGTGACGAGCAAGGGTACCGGAGGTATACAGAAGGTAGTTCCGGTCACTTCTGAGCTCGGTAATTTCATCGGTGCTCCTGAAGTTTCGAGGACTGAAGCTGTTAAGAAAGTTTGGGAGTATATCAAGCTGCAGAATCTTCAGAATCCTAATAACAAGAAGGAGATCTTTTGTGATGACAAGCTGAAGACCATTTTCGATGGGAAAGATAAAGTGGTCTTCACTGAGATTGCCAGATTGCTAGCTACCCATTTCGTGAAATCAACCTGA 408 0.4926 MAPARVFGAFAGRMLMAAAAKGATKKAAASGGAASTTVVKKTAVKKTVTSKGTGGIQKVVPVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFDGKDKVVFTEIARLLATHFVKST 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g01164 135 Gene3D SWIB/MDM2 domain 49 135 IPR036885 -
Mepo5g01164 135 CDD SWIB-MDM2_like 60 131 - -
Mepo5g01164 135 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 25 132 - -
Mepo5g01164 135 ProSiteProfiles SWIB/MDM2 domain profile. 55 133 IPR003121 -
Mepo5g01164 135 SUPERFAMILY SWIB/MDM2 domain 51 133 IPR036885 -
Mepo5g01164 135 Pfam SWIB/MDM2 domain 60 131 IPR003121 -
Mepo5g01164 135 SMART swib_2 56 135 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g01164 Mepo-Chr5 11827004 11828844 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo5g01164 SWIB 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g01164 - - adu:107487278 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01164 5 11827004 11828844 Mepo5g01164 5 11827004 11828844 ECH