Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00949 ATGACTAGTTCTTCAGCTGCATCTCGCAAGACTCTGAGCAAAATCGCCTGTAATCGGCTTCAGAAAGAACTCGTCGAGTGGCAGGTTAATCCACCAACTGGTTTCAAACACAGAGTCACCGACAATCTCCAAAGGTGGGTTATTGAAGTGGGTGGAGCTCCTGGGACACTGTACTCCAATGAGACCTATCAGCTTCAGGTGGATTTTCCTGAGAATTACCCTATGGAAGCTCCACAGGTGATATTCTTGCATCCGGCTCCATTGCATCCTCATATCTATAGCAATGGACATATTTGTTTAGATATATTATATGATTCATGGTCTCCTGCAATGACTGTTAGTTCTATCTGCATTAGTATTCTGTCGATGCTTTCAAGCTCAACTGCAAAGCAACGCCCTGAAGATAATGATCGCTATGTAAAGAACTGCAGAAATGGAAGATCGCCCAAGGAGACAAGGTGGTGGTTCCATGATGACAAAGTATGA 486 0.4403 MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00949 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Mepo5g00949 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Mepo5g00949 161 SUPERFAMILY UBC-like 6 143 IPR016135 -
Mepo5g00949 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 138 - -
Mepo5g00949 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Mepo5g00949 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Mepo5g00949 161 SMART ubc_7 18 161 - -
Mepo5g00949 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Mepo5g00949 161 CDD UBCc 17 117 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00949 Mepo-Chr5 9199817 9204750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00949 1 112 Miscellaneous Gene Families AT2G33770 28.205 5.78e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00949 K10688 - gmx:100785024 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00949 5 9199817 9204750 Mepo5g00949 5 9199817 9204750 ECH