Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00947 ATGGCTTCAGCTTTATCCTCTATCATCAACCAACCTCACACTGCTCAACGACTCAAACTTCATTCTCCATCTTGTCTCAGATTCTTCAAACACTATGCTTTTCACAAACCATCCTCAACTTCTTCTTTGTCTTCACGCCCTCTCATCACCGTTTCCAGAACCTTCTCATCGCTTTCCAACAAACCTGAAAACCCTTCCCTCGGCCACTTCGTCGCTCAAGCTTCTCTCACCGCTTCCCAACTTCAACAACCCCACCTTGTGGCGGATACTGAAGCTCCTTCAACTGGTCGAATATATCATGAGACCTATGGATGTCAAATGAACGTTAATGATATGGAGATTGTTCTGTCTATAATGAAAAATGCAGGCTATAATGAAATTGTGACTGTTCCTGAGAATGCAGAGATAATATTCATCAACACTTGTGCCATAAGAGATAATGCAGAAATGAAAGTGTGGCAGAGGCTAAATTACTTTTGGTTTCTTAAAAGGAATTGGAAGACGAATGTCGCTACTGGAAGGTCACAGTCCTTACGTCCTCCAAAAGTAGTTGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAAAAGATACTCGATTCAGACAAAATGGTTGATGTTGTATGCGGGCCTGATGCTTATAGGGATTTGCCACGGTTACTGGAAGAGGTTGAGTATGGCCAGAAAGGGATTAACACTCTTCTTTCCCTTGAGGAGACTTATGCTGATATTAATCCAGTTCGGATCTCTCAGAATTCCATTAGTGCTTTTGTTTCAGTGATGAGGGGTTGCAACAATATGTGTTCGTTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGATCACGTCCTGTCGAATCCATTGTGAGAGAGGTGGCAGAGCTTTGGAAAGAGGGTGTGAAAGAAGTAACTCTTCTTGGCCAGAATGTGAACAGCTACAATGATGCATCTGTGGTTGAAAAAGAGGCTGAAGCAGGGTCCAATTGGAAACTTAGTGAAGGATTTTCCAGCATATCAAAGGTCAGAACCACGGGCTTAAGGTTTTCTGATCTGTTGGATCGACTCTCATTAGAATTTCCTGAGATGCGTTTCAGATTCACGTCTCCACACCCTAAAGATTATCCAGATGAACTGCTTTATATTATGCGGGAAAGACATAATATATGCAAATTGATACATTTACCTGCACAATCAGGAAGTAGCAAAATGCTTGAGAGAATGAGGCGAGGATATACTCGAGAGGCTTACTTGAGTCTTGTGCAAAAAATTCGAAGTATTATTCCCGATGTGGCCCTAAGCAGTGATTTCATTTGTGGTTTTTGTGGAGAAACGGAGGAGGATCATTCTGACACATTGACTCTAGTAAAAGAAGTTGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAACTATGCCGATGATGTTCCTGAGGAAACCAAGCAGAGGAGGCTAACTGAACTTATCGAGACTTTCCGTGAGAGCACAGGAAAGTGTTACGACGAACAGGTTGGAACTACACAGCTTGTATTAGTTGAAGGACCCAATAAAAGAGCTCCAGATACTGAACTAATTGGCAAGAGTGACAAGGGCCATCGGGTAATATTTGTCAATCTGCCAATCTCAGACAGGGAAGATGTTAATACAAAGAGAAATCCTGCGGTTGGCGATTATGTTGAAGTTCAGATAACAAGATCTACAAGGGCATCACTCTTCGGCGAAGCACTTGCTATTACTAAATTGAGTTCATTTTACAATAATTTGGAAAGAGAAGCTGTTGCTTGCAGCATGTAA 1815 0.4198 MASALSSIINQPHTAQRLKLHSPSCLRFFKHYAFHKPSSTSSLSSRPLITVSRTFSSLSNKPENPSLGHFVAQASLTASQLQQPHLVADTEAPSTGRIYHETYGCQMNVNDMEIVLSIMKNAGYNEIVTVPENAEIIFINTCAIRDNAEMKVWQRLNYFWFLKRNWKTNVATGRSQSLRPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRISQNSISAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDASVVEKEAEAGSNWKLSEGFSSISKVRTTGLRFSDLLDRLSLEFPEMRFRFTSPHPKDYPDELLYIMRERHNICKLIHLPAQSGSSKMLERMRRGYTREAYLSLVQKIRSIIPDVALSSDFICGFCGETEEDHSDTLTLVKEVGYDMAYMFAYSMREKTHAHRNYADDVPEETKQRRLTELIETFRESTGKCYDEQVGTTQLVLVEGPNKRAPDTELIGKSDKGHRVIFVNLPISDREDVNTKRNPAVGDYVEVQITRSTRASLFGEALAITKLSSFYNNLEREAVACSM 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00947 604 Gene3D - 97 239 IPR038135 -
Mepo5g00947 604 SMART MiaB 253 494 IPR006638 GO:0003824|GO:0051536
Mepo5g00947 604 SFLD Radical SAM 95 588 IPR007197 GO:0003824|GO:0051536
Mepo5g00947 604 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 95 584 IPR006463 GO:0006400|GO:0016740|GO:0051539
Mepo5g00947 604 SFLD CDK5RAP1 95 588 - -
Mepo5g00947 604 SFLD B12-binding domain containing 157 478 - -
Mepo5g00947 604 ProSiteProfiles Radical SAM core domain profile. 249 505 IPR007197 GO:0003824|GO:0051536
Mepo5g00947 604 CDD Radical_SAM 261 479 - -
Mepo5g00947 604 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 96 225 IPR013848 GO:0035596|GO:0051539
Mepo5g00947 604 FunFam CDK5 regulatory subunit-associated protein 1 96 239 - -
Mepo5g00947 604 Pfam Radical SAM superfamily 257 453 IPR007197 GO:0003824|GO:0051536
Mepo5g00947 604 FunFam CDK5 regulatory subunit-associated protein 1 251 510 - -
Mepo5g00947 604 Gene3D tm_1862 like domain 251 510 IPR023404 -
Mepo5g00947 604 SUPERFAMILY Radical SAM enzymes 246 501 - -
Mepo5g00947 604 Pfam TRAM domain 509 583 IPR002792 -
Mepo5g00947 604 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 97 579 IPR005839 GO:0006400|GO:0016740|GO:0051539
Mepo5g00947 604 ProSitePatterns Methylthiotransferase radical SAM domain signature. 257 277 IPR020612 GO:0051539
Mepo5g00947 604 ProSiteProfiles TRAM domain profile. 508 584 IPR002792 -
Mepo5g00947 604 Pfam Uncharacterized protein family UPF0004 97 209 IPR013848 GO:0035596|GO:0051539
Mepo5g00947 604 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 54 596 - -
Mepo5g00947 604 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 98 581 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00947 - - gmx:100799544 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00947 5 9166842 9174151 Mepo5g00947 5 9166842 9174151 ECH