Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00795 ATGGTATCCGAATCGGAACTCATCGAGCGCCTCCGTGAGTTCCTCCGTAACTCCGACCTCAACACCACCACTACCTCCACCGTCCGCCGTCAGTTAGAATCCGATTTCGGTATCGATTTATCTGATAGGAAGTCTTTCATTCGAGAACAGGTCGACTTGTTCCTTCAAACCGTTCAACAAGACGATGAACCTCAAAACGACGCCGTAGAAGAAGAAGATTCTGATGATAAACCAGAACAAAGCCAAGAAGGTTCCGATGAAGAAGATGATGATAATGAGGAAGAAGAAAAACCGAAGCGTACCAGAGGTAGTGTGAAGAAGACGAAGAACAAGAAGAAAGAACGATCTAACAAATCAGGCGATGAGGTAGTAAAGAAAAAAGGTGGCGGCGGTTTTTGCAAAATATGTAGCCTGTCTCCGCAACTTCAGGAATTTGTTGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAAGCAATAGGAGAAATATCATTTGCGATGAACCGCTGCGTGCCCTTTTTGGTGTTGACACCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCATTGGATTCAGATGATGTTATCCAGGTGAAGTCGGCACCAAAGGAAAAGCCGGCACCAAAGGAAAAGCCTGCACGAAAGGAAAAGAAGAAGAAACAAGAGAGAGAAGATGATGATTCGGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAAGTAGGATCAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGATGCCCTTGCAAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGATGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGCAAATATTATGTGATAAAAAGCTGAAAGAACTCTTTGATGTTGACTCCTTCGTTGGCTTTACCGTCACAAAACTGCTGGCGCCTCATTTCATAAAGGCAGAGCAGTGA 1035 0.4338 MVSESELIERLREFLRNSDLNTTTTSTVRRQLESDFGIDLSDRKSFIREQVDLFLQTVQQDDEPQNDAVEEEDSDDKPEQSQEGSDEEDDDNEEEEKPKRTRGSVKKTKNKKKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPSNRRNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKKKKQEREDDDSDEPKGKEKRQKVGSGKGFLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDKKLKELFDVDSFVGFTVTKLLAPHFIKAEQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00795 344 Gene3D SWIB/MDM2 domain 259 344 IPR036885 -
Mepo5g00795 344 Pfam SWIB/MDM2 domain 268 339 IPR003121 -
Mepo5g00795 344 Pfam SWIB/MDM2 domain 135 206 IPR003121 -
Mepo5g00795 344 CDD SWIB-MDM2_like 269 339 - -
Mepo5g00795 344 MobiDBLite consensus disorder prediction 64 94 - -
Mepo5g00795 344 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Mepo5g00795 344 FunFam Upstream activation factor subunit 125 214 - -
Mepo5g00795 344 SUPERFAMILY SWIB/MDM2 domain 129 210 IPR036885 -
Mepo5g00795 344 ProSiteProfiles SWIB/MDM2 domain profile. 131 208 IPR003121 -
Mepo5g00795 344 SMART swib_2 265 344 IPR019835 -
Mepo5g00795 344 SMART swib_2 132 211 IPR019835 -
Mepo5g00795 344 MobiDBLite consensus disorder prediction 218 260 - -
Mepo5g00795 344 Pfam DEK C terminal domain 2 55 IPR014876 -
Mepo5g00795 344 Gene3D - 1 57 - -
Mepo5g00795 344 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 211 - -
Mepo5g00795 344 ProSiteProfiles SWIB/MDM2 domain profile. 264 341 IPR003121 -
Mepo5g00795 344 FunFam Upstream activation factor subunit 255 344 - -
Mepo5g00795 344 CDD SWIB-MDM2_like 136 206 - -
Mepo5g00795 344 SUPERFAMILY SWIB/MDM2 domain 262 343 IPR036885 -
Mepo5g00795 344 SUPERFAMILY DEK C-terminal domain 3 56 - -
Mepo5g00795 344 MobiDBLite consensus disorder prediction 58 125 - -
Mepo5g00795 344 Gene3D SWIB/MDM2 domain 126 214 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00795 Mepo-Chr5 7594731 7599192 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo5g00795 SWIB 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00795 K15223 - gmx:100786835 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00795 5 7594731 7599192 Mepo5g00795 5 7594731 7599192 ECH