Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00539 ATGGGTTGCTACTACTCTAAAGGAGGAAGATTTCTAGGGCAGGAAGACCCAATAATTCTTGCATCAGAAACAACATTCAGTGTTAATGACGTTGAAGCATTATTTGAGCTTTTTAAGAGTATCAGTAGGTCGATCATTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCGATTTTCAATAATAAAACAAAGGAGAACCTCTTCACAAGTCGGGTCTTTGATCTATTTGATGTAAAGAGGAAGGGAGTAATTGACTTTGGTGACTTTGTGAGAGCACTCAATGTCTTCCACCCTAATTCACCACAAGAATTCAAGATAGATTTTTCTTTTAGGCTCTATGATCTCGACAATACGGGTTTTATAGAGCGTGATGATGTCAAACAAATGATAGATGCGCTTCTTTGTGAATCTGAAATTAAGTTGAGTGATGACATGATTGAAACAATTATTCAAAAGACTTTCTTGGATGCTGACCCAAACCAAGATGGGAAGATAGACAAATCCGAGTGGAAAAATTTTGTTTCTCAAAATCCGTCATTGTTAAAAATCATGACTCTACCTCATCTAAGGGATATAACAACAACTTTCCCCAGTTTTGTATTTAACTCAAAGGTGGATGATGACATTGCTACTTGA 642 0.3629 MGCYYSKGGRFLGQEDPIILASETTFSVNDVEALFELFKSISRSIIDDGLISKEEFQLAIFNNKTKENLFTSRVFDLFDVKRKGVIDFGDFVRALNVFHPNSPQEFKIDFSFRLYDLDNTGFIERDDVKQMIDALLCESEIKLSDDMIETIIQKTFLDADPNQDGKIDKSEWKNFVSQNPSLLKIMTLPHLRDITTTFPSFVFNSKVDDDIAT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00539 213 Gene3D - 17 210 - -
Mepo5g00539 213 ProSitePatterns EF-hand calcium-binding domain. 116 128 IPR018247 -
Mepo5g00539 213 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Mepo5g00539 213 FunFam calcineurin B-like protein 3 16 209 - -
Mepo5g00539 213 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Mepo5g00539 213 PANTHER CALCINEURIN B 14 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mepo5g00539 213 CDD EFh 107 177 IPR002048 GO:0005509
Mepo5g00539 213 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Mepo5g00539 213 PRINTS Recoverin family signature 121 139 - -
Mepo5g00539 213 PRINTS Recoverin family signature 74 95 - -
Mepo5g00539 213 PRINTS Recoverin family signature 167 187 - -
Mepo5g00539 213 Pfam EF-hand domain pair 107 175 IPR002048 GO:0005509
Mepo5g00539 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Mepo5g00539 213 SMART efh_1 151 179 IPR002048 GO:0005509
Mepo5g00539 213 SMART efh_1 107 135 IPR002048 GO:0005509
Mepo5g00539 213 SMART efh_1 70 98 IPR002048 GO:0005509
Mepo5g00539 213 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00539 Mepo-Chr5 4694598 4698961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00539 1 213 EF-hand Containing Proteins AT4G17615 71.963 1.84e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00539 K06268 - gmx:100779020 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00539 5 4694598 4698961 Mepo5g00539 5 4694598 4698961 ECH
Mepo5g00539 5 4694598 4698961 Mepo1g01682 1 16609920 16615552 PCT