Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00473 ATGAGTACTCCAACGGCGAAAGGCGAAGACAGAGATATTGTTATAACAAAAAGTGATAGAAAACATGCATCATCTTCTGGTGTTAAGGGATTGAGGACCAAATCAATTCATCCTCCTATTGAAACGCATTGGGATCTCCCTACTACACAAAAAGGAAAGAAAAAAGCTTCACTCTCCATCAAGTCATTGCTGTCTTACCCGCTCATGAAATTTGGAAGGAGTAAAAGTTTGGAAATGGTTCTAGGAGGAACTCATGATCCAAATGATGAGCAAATTGTTGAGGCTTTTCGCGAAATGCTTTCACGTGAGGGTCTATTACCACCTAAACACAATGATTATCATACTCTTCTAAGGTTTCTGCGGATGAATGATTTTGATATGACAATATCCAAAGATATGTTTCTCAATTATCTGAAATGGCGAAAGGAATTTCGAGTCGACATGATTCATAAGGAATTCAAATTCACAGAATACACAGAAGTGAAAAAATGCTATCCTCATGGATACCATGGAGTTGATAAATGTGGCAGACCTGTGTATATTGAGAGAATTGGGATGATAGATGTTAACAAACTGTGGCAAGTAACCACACAAGAAAGGCTTATCAAGCATCACGTGTCAGAACAAGAGAAAACGCTAAGAGTAAGATACCCTGCATGTTCATTAGCAGCTAAAAGACACATAGCTTCCACAACAAGTATCTTGGATGTCAATGGAGTAGGAATGTCTAATTTCTCAAAGCCTGCAAGGTACATCTTCATGGAAATTCAGAAGATTGATAGCAGTTATTATCCTGAGACTCTAAATAAACTCTTTATTATTAATGCTGGTTCTGGCTTTAAGATGTTGTGGAAAGCAGTGAAGGCATTCCTAAGTGAACGCACAGTAGCAAAAATTCAAGTTTTGGGTTCTAATTATCTCAGTGTGTTGCTCGAGGCTATTGATCCGAGTAACTTGCCAACATTTTTGGGTGGTAATTGCACATGTTATGAGTATGGAGGTTGCTTGATGAGTGACCAAGGCCCATGGAAAAATTCAGAATTGTTAGAAATGATTCAGACAACGGAAGAGATGGATGGTGCGTGCGAACACAACAATGTGGTTTCAGAAGGATCGTTGATGTCCAAAACGGTTGAAATGCAAAACAAAGATGATGTAAGTATGAGTTTGGCACTTGAGGAGACAACAAGGGCTAGAACAGGCTTGTCATGTAGGTTAGCATTACAAAAAATTGATTGGCTTGAAGCTAGTCTTGGAGATATCAAGAATAAAATAAAGACATTAGAAGATGCACTTCAAGACACCAAGATGGCATTGAAAGAACTTGCACAACATATAGAACAATAA 1347 0.3831 MSTPTAKGEDRDIVITKSDRKHASSSGVKGLRTKSIHPPIETHWDLPTTQKGKKKASLSIKSLLSYPLMKFGRSKSLEMVLGGTHDPNDEQIVEAFREMLSREGLLPPKHNDYHTLLRFLRMNDFDMTISKDMFLNYLKWRKEFRVDMIHKEFKFTEYTEVKKCYPHGYHGVDKCGRPVYIERIGMIDVNKLWQVTTQERLIKHHVSEQEKTLRVRYPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYIFMEIQKIDSSYYPETLNKLFIINAGSGFKMLWKAVKAFLSERTVAKIQVLGSNYLSVLLEAIDPSNLPTFLGGNCTCYEYGGCLMSDQGPWKNSELLEMIQTTEEMDGACEHNNVVSEGSLMSKTVEMQNKDDVSMSLALEETTRARTGLSCRLALQKIDWLEASLGDIKNKIKTLEDALQDTKMALKELAQHIEQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00473 448 SUPERFAMILY CRAL/TRIO domain 157 352 IPR036865 -
Mepo5g00473 448 SUPERFAMILY CRAL/TRIO N-terminal domain 84 152 IPR036273 -
Mepo5g00473 448 SMART sec14_4 157 328 IPR001251 -
Mepo5g00473 448 Gene3D - 145 357 IPR036865 -
Mepo5g00473 448 MobiDBLite consensus disorder prediction 1 34 - -
Mepo5g00473 448 Pfam CRAL/TRIO domain 165 325 IPR001251 -
Mepo5g00473 448 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 53 441 - -
Mepo5g00473 448 MobiDBLite consensus disorder prediction 10 26 - -
Mepo5g00473 448 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 157 331 IPR001251 -
Mepo5g00473 448 Gene3D - 68 144 - -
Mepo5g00473 448 SMART CRAL_TRIO_N_2 112 137 IPR011074 -
Mepo5g00473 448 CDD SEC14 158 326 IPR001251 -
Mepo5g00473 448 Coils Coil 411 445 - -
Mepo5g00473 448 PRINTS Cellular retinaldehyde-binding protein signature 115 137 - -
Mepo5g00473 448 PRINTS Cellular retinaldehyde-binding protein signature 284 303 - -
Mepo5g00473 448 PRINTS Cellular retinaldehyde-binding protein signature 317 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00473 Mepo-Chr5 4110806 4120355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo5g00473 90 322 Acyl Lipid Metabolism Gene Families AT5G47730 28.512 4.84e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00473 K26544 - gmx:100807344 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00473 5 4110806 4120355 Mepo5g00473 5 4110806 4120355 ECH