Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00469 ATGCTGGATCTACAACATGCGGCGGCCTTCCTCCCCCGCACTAAGATCCAGGCCTCCACTGATTATTCAGTGACGACGGGGTCTGACCTCTGCATCGTCACTGCTGGGGCTCGCCAGATTAATGGCGAGTCCAGATTGAATTTGCTACATAGGAATGTTGCTTTGTTTAAAAAAATTATACCGCCTTTGGTTCGTTACTCTCCTCATTGTGTTCTTCTAATTGTTTCCAATCCTGTTGATGTGCTCACTTACATTGCTTGGAAACTCTCTGGTTTCCCCTCCAACCGCGTCATTGGTTCAGGCACTAATTTGGATTCCTCTCGCTTCCGTTTCCTTATTGCTGATCATCTTGATGTTAATGCTCAAGATGTGCAGGCATACATAGTGGGGGAACACGGTGACAGTTCAGTGGCACTATGGTCAAGCATTAGTGTTGGAGGTGTTCCAGTGCTAAGCTTTTTGGAAAAACAACAAATAGCTTACGAGAAAGAAATGCTAGAGAACATACATAAGGAGGTTATAAACGGCGCATATGAAGTGATCAGTTTAAAAGGGTACACTTCTTGGGCGATAGGGTACTCCGTCGCAAACTTGGCTCGAACAATTATGAGGAATCAAAGGAAGATTCACCCTGTTTCAGTTCTTGCAAAGGGATTTTATGGCATTGATGGTGGAGAAGTGTTTATTAGTTTGCCTGCACAGCTTGGCAGAGGAGGTGTATTGGGTGTGACTAATATTCATATGACTGAAGAGGAGATAAAGAGGCTTAGGGACTCTGCTATCACTATTCTTGAGCTGCAGAATCAGTTAGGTATTTGA 819 0.4432 MLDLQHAAAFLPRTKIQASTDYSVTTGSDLCIVTAGARQINGESRLNLLHRNVALFKKIIPPLVRYSPHCVLLIVSNPVDVLTYIAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKEMLENIHKEVINGAYEVISLKGYTSWAIGYSVANLARTIMRNQRKIHPVSVLAKGFYGIDGGEVFISLPAQLGRGGVLGVTNIHMTEEEIKRLRDSAITILELQNQLGI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00469 272 Pfam lactate/malate dehydrogenase, NAD binding domain 1 99 IPR001236 GO:0016491
Mepo5g00469 272 NCBIfam L-lactate dehydrogenase 1 263 IPR011304 GO:0004459|GO:0005737
Mepo5g00469 272 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 270 - -
Mepo5g00469 272 Gene3D - 102 270 IPR015955 GO:0003824|GO:0016616
Mepo5g00469 272 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 102 262 IPR022383 GO:0016616
Mepo5g00469 272 SUPERFAMILY LDH C-terminal domain-like 100 269 IPR015955 GO:0003824|GO:0016616
Mepo5g00469 272 PRINTS L-lactate dehydrogenase signature 127 140 IPR001557 GO:0016616|GO:0019752
Mepo5g00469 272 PRINTS L-lactate dehydrogenase signature 97 115 IPR001557 GO:0016616|GO:0019752
Mepo5g00469 272 PRINTS L-lactate dehydrogenase signature 73 93 IPR001557 GO:0016616|GO:0019752
Mepo5g00469 272 CDD LDH_1 1 269 - -
Mepo5g00469 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 99 IPR036291 -
Mepo5g00469 272 Gene3D - 1 101 - -
Mepo5g00469 272 PIRSF Lac_mal_DH 1 272 IPR001557 GO:0016616|GO:0019752
Mepo5g00469 272 ProSitePatterns L-lactate dehydrogenase active site. 129 135 IPR018177 GO:0004459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00469 Mepo-Chr5 4086437 4087879 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00469 K00016 - gmx:100818856 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00469 5 4086437 4087879 Mepo5g00469 5 4086437 4087879 ECH
Mepo5g00469 5 4086437 4087879 Mepo1g01611 1 15874496 15876855 PCT