Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo5g00039 ATGGATGATGATCGATGGCAGTCTTACAACACCGTTTACACGAGCGCGAAAGCAGGAATGGAAGGTGTTGACAAAGAAAAAGTACAAAGGATTGTTTATGAAATGAGCAAAGGATCCAAATATTTTCAGAATGAGGAAAGGAAGGAGTCTTTTATCAAACATAAAGTTCAAAACATGCGTCTTCACTTTTCAAACCTTACACACTCTGATTTATCACATTATCAAAAGATTGCTGATAAAAGAATTCTTGAACTTGAAGCTTCTCGCGACCTTTCAAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAATCCTATGTTAAAGGGCATTCCAATTGCTGTTGGCACCATGTCTATGATATCCACTGCCAATTATGAGGCCAGGAAATTTGGAGTTCGTTCTGCCATGCCTGGCTTTATTGCACGGAAGCTATGTCCAGAGTTAATCTTTGTTCCAGTTGATTTCAACAAGTATACTTATTACAGTGATTTGACCAGAAAAGTTTTTCAGAGGTATGATCCAAATTTCATCGCCGGTAGTCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAGAGAAAGAAATGTCAAAAGTGAAGAAATTGCTCAAGAAATCAGAGTCGGTGTTTATGAAGAGACTGGTCTCACATGTAGTGCTGGAGTGGCACCGAATCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTACCAAATGACCGCTTGGCTGTTATGACTTTCATATCCTCCCTTCCTATCAGAAAGATTGGCGGCATCGGTAAGGTCACTGAACATATTTTGAAGGAAGTTTTTGGAATAAGCACATGTGAGCAGATGCTGGATAAGGGTGGCTATCTTAGTGCTCTTTTTTCTCAGTCAACAGCAGATTTTTTTTACTCTGTGGGTTTAGGTTTGGGAAAGACGGATTCTCCCCAAGTAAGATTTCGGAAAAGTATCAGCAATGAGAGGACGTTTACTGCCACTGAGGATGAAGCGCTGTTGCATAAAAAATTGGCGGAGCTTGCTGAAATGCTATCCACAGACATGCAAAAAGAGGGTCTGCATGGGAGAACGTTAACTCTTAAACTGAAAACTGCTTCTTTTGAGGTTCGGAATAGAGCTGTGACTTTACAAAACTACATCAACTCAAGTGATGATATTTTGAAGCATGCATCAAAATTGCTGAAAGCTGAACTTCCTGTTTCTGTACGATTAATAGGCCTTAGAGTATCACAGTTTAGTGGACAAAAGTGTGGTGCTACACCTGATCCTACACAGAAGCCTATTACCAATTTCATTACTTCAGGAGAAGCCAATAGGAAAAATAGTTCTTTTTCAGATGTTACAGACCACGACTTTGTCCCTGATACAGAAACTGATCTTTCCCTTGACGGTAGGCACACAGATCAGCTTGATAGCAGAGATCCTTTTGATGGTAATCATTCGTTAGATGTAAATTACCAAAGCCCCACTCTTCAGAAAACTGGTGGTGCAGAGAAGGTGCGAACTTCTGACAATGCTGATGCAAGTTCTAACCACAGTGGATGTACAGAGGTTCTGGGATCAACTTCTTTCCAAGGGCAGTTCGAGGGCAAAAATGTGAATAACGGGCCTAATCTCCTGGAGGATGATAAGTCTAATTCTTGTCAGGAAATGACAATGTTGTGGTTGGATGACTATAAATGTTCACTCTGTGGAGCAGAACTTCCTCCAAGTTTTGTTGAGGAAAGATTAGAGCATTCTGATTTCCATTTTGCTGAATTGCTTCAAAAGGAAGAGTCTAGTATTCGTCAAGCATCTGTTCCGATTCAAAGTCAGGGTCAGAAGCACCGAAACAATAGTCAAAGCAAATCCAAGAAGCAAAAGTTGACTCACAAGGAGGGCAAGCATACGCCCATTGATCATTTTTTTGTTAGAAAGTAA 1968 0.4029 MDDDRWQSYNTVYTSAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKESFIKHKVQNMRLHFSNLTHSDLSHYQKIADKRILELEASRDLSRIWLHVDMDAFYAAVETLSNPMLKGIPIAVGTMSMISTANYEARKFGVRSAMPGFIARKLCPELIFVPVDFNKYTYYSDLTRKVFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRVGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKVTEHILKEVFGISTCEQMLDKGGYLSALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNERTFTATEDEALLHKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRAVTLQNYINSSDDILKHASKLLKAELPVSVRLIGLRVSQFSGQKCGATPDPTQKPITNFITSGEANRKNSSFSDVTDHDFVPDTETDLSLDGRHTDQLDSRDPFDGNHSLDVNYQSPTLQKTGGAEKVRTSDNADASSNHSGCTEVLGSTSFQGQFEGKNVNNGPNLLEDDKSNSCQEMTMLWLDDYKCSLCGAELPPSFVEERLEHSDFHFAELLQKEESSIRQASVPIQSQGQKHRNNSQSKSKKQKLTHKEGKHTPIDHFFVRK 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo5g00039 655 Pfam IMS family HHH motif 258 288 IPR024728 -
Mepo5g00039 655 Gene3D - 329 433 IPR036775 GO:0003684|GO:0006281
Mepo5g00039 655 ProSiteProfiles Zinc finger UBZ3-type profile. 570 607 IPR041298 -
Mepo5g00039 655 SUPERFAMILY DNA/RNA polymerases 69 323 IPR043502 -
Mepo5g00039 655 Gene3D - 251 324 - -
Mepo5g00039 655 MobiDBLite consensus disorder prediction 497 530 - -
Mepo5g00039 655 MobiDBLite consensus disorder prediction 451 530 - -
Mepo5g00039 655 ProSiteProfiles UmuC domain profile. 95 275 IPR001126 GO:0006281
Mepo5g00039 655 MobiDBLite consensus disorder prediction 611 655 - -
Mepo5g00039 655 MobiDBLite consensus disorder prediction 459 494 - -
Mepo5g00039 655 FunFam Polymerase (DNA directed) kappa 105 157 - -
Mepo5g00039 655 Pfam impB/mucB/samB family 98 242 IPR001126 GO:0006281
Mepo5g00039 655 PIRSF DNA_pol_eta 205 461 - -
Mepo5g00039 655 PIRSF DNA_pol_eta 441 655 - -
Mepo5g00039 655 PIRSF DNA_pol_eta 87 210 - -
Mepo5g00039 655 Gene3D - 112 160 - -
Mepo5g00039 655 Pfam Ubiquitin-Binding Zinc Finger 573 607 IPR041298 -
Mepo5g00039 655 Pfam impB/mucB/samB family C-terminal domain 331 429 IPR017961 GO:0003684|GO:0006281
Mepo5g00039 655 CDD PolY_Pol_IV_kappa 96 428 IPR022880 GO:0003887
Mepo5g00039 655 Hamap DNA polymerase IV [dinB]. 92 478 IPR022880 GO:0003887
Mepo5g00039 655 FunFam DNA polymerase IV 328 435 - -
Mepo5g00039 655 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 6 653 - -
Mepo5g00039 655 MobiDBLite consensus disorder prediction 611 627 - -
Mepo5g00039 655 Gene3D - 13 99 - -
Mepo5g00039 655 FunFam DNA polymerase kappa 198 324 - -
Mepo5g00039 655 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 329 426 IPR036775 GO:0003684|GO:0006281
Mepo5g00039 655 Gene3D - 100 250 IPR043128 -
Mepo5g00039 655 FunFam DNA polymerase kappa subunit 156 250 - -
Mepo5g00039 655 FunFam DNA polymerase kappa subunit 12 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo5g00039 Mepo-Chr5 377121 381629 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo5g00039 K03511 - gmx:100816973 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00039 5 377121 381629 Mepo5g00039 5 377121 381629 ECH