Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04287 ATGGATTCCTCCTCCGATAACAAAATCGTGCAAGCCTCGCCCGTTCCTGAAGATCCCGAGAAGAAGAAGAAAAAACTAGAAAAGGAAAAAGAAAGGGAAAGAGAGAAAGCTGAGAAGTTAGCCAAGTTCAACAAGAAGAAAGAAGCTCAGCAACTAGCGCAACAAGCATCCAATGCTTCTAAGAAGAGCGAAAAGAAAACTGCCAAACGCGGTGCAGTGGTTGAGAATCCTGAGGATTACATTGATCCCGAGACTCCGTTTGGTGATAAGAAACAAATGTCTAGGCAATTGGCGCAGAAGTATAATCCAACCGCCGTCGAGAAATCGTGGTACGAGTGGTGGGAGAAATCAAAGTATTTTGTGGCAGATGCTAGCAGCAAGAAACCGCCCTTTGTGATTGTTTTGCCTCCACCGAATGTGACAGGTGCCCTCCATATAGGCCATGCTCTGACAGCTGCGATTGAGGATACGATGATTCGTTGGCGACGAATGTCTGGATACAATACTTTGTGGGTGCCTGGGATGGATCATGCGGGAATTGCTACACAGGTAGTTGTGGAGAAAAAGATAATGCGTGAGAAGAAACTCACAAGACATGATCTGGGTCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTATGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAGAGATCTAAGGGTGTAACAGAGGCTTTTGTAAGGCTTTACAAGCTAGACCTTATCTATAGAGACGTACGGTTAGTGAATTGGGATTGTGTGTTACGTACGGCAGTATCTGATATTGAGGTGGATTATATTGAGATAAAAGAAAGGACCCTACTAAAGGTCCCAGGATACGACAGACCTGTTGAATTTGGAGTTTTAAAAAAATTTGCATACCCTTTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACCATGCTTGGTGATACTGCTATTGCCGTTCATCCTACTGATGACCGATACAGCCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAGAAAGATTCCTATAATATGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACAGGTGCTGTGAAGATTACACCGGCCCATGATCCCAATGATTTTGAGGTTGGAAAACGTCACAAACTCGAATTTATTAATGTTTTCACTGACGATGGGAAAGTAAATTCCAATGGGGGCTCGGAGTTTTTGGACATGCCTCGATTTACGGCCCGGGAAGCAATAACAGAAGCATTACAAAAGAAGGGTCTTTATAGAGGTTCTGAAAACAATGAGATGCGCCTTGGCGTATGTTCAAGAAGCAACGATGTTATAGAGCCCATGATAAAGCCACAATGGTATGTCAATTGCAGAGATATTGCAAAGGAGGCTCTTCATGCTGTCACGGATGAGGAAAACAGAAGGGTAGAGATCATTCCGAAACAATATGTGGCTGATTGGAAGAGATGGCTGGAAAACATACGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCAAATTCCTGCATGGTATGTTACTTTAGAGGATGATATACTGCAGGAATTGGGTGCGTACAACGACCATTGGGTAGTGGCAAAAAATGAAGAAGAGGCCAGAGATGAAGCTAACCAAAGGTATAATGGAAAGAAGTTTCATTTAATCCGGGACCCTGACGTTCTGGATACATGGTTTTCTTCTGGTCTGTTCCCTTTGACTGTACTGGGATGGCCTGATGACACAGACGACCTGAGGGCATTTTATCCAACTTCTGTTTTGGAAACCGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTTATGTTAGGAATGAAGTTGGGAGGTGATGTGCCTTTTAGCAAGATTTATTTGCACCCCATGATTCGTGATGCACATGGACGCAAGATGTCTAAGTCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGGATAACACTAGAAGGTCTACATACAAGGTTAGAAGGTGGTAACCTTGACCCTAAAGAACTAGCTGTTGCCATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGAGGAATGTGGCGCTGATGCCCTCCGTTTTGCGCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGCAATAAATTATGGAATGCGGTACGATTTGCTATGAGCAAGCTTGGAGATGATTATATCCCTCCTGCAAATTTGACTCTAGATAATCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAATAAAACCATATCAAAAATAACCAAGTCTCTAGAATTGTATGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTTATTGAAGTGATCAAGCCTTACTTTTCTGGCAATGATCCAAAGTTTGCTTCCGAAAGACGGTTTGCTCAAGACACTTTGTGGTTTTGTCTAGACAATGGTCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTTCGCCCAGGGAATTTAAGAGAGCAGAATCTATCATGATAGCTGATTATCCATCAGCTACAGAGAGCTGGAATAATGAAAAAGTAGAGAATGAGATGGACCTCATTGAGTCTACTGTTAAGTCTATCAGGTCACTGGCAAAAGAGAGACGGGACAGGCGACCGGCTTTTGCTCTCTGCCGAACACAGGTGGTTGAAGAGATTATTAACAGCCATCAACTGGAGATCGCAACACTAGCTAATCTATCCTCTTTGACTGTGATCACTAAAATTGAAGCTTTTCTTTCTGGATATGCTGATACTGTCGTAAATGAAAGCCTTTCTGTGTATTTAGAGCTTCAAGCAATTAATTCTGAAGATGCTAGGCTTGGAAAGATGAAGAAGATAGATGAGCTGAAAAAGCAAATAGATAGATTAGAGAGGAGTATGAATGTTCCAGGTTATAAAGAGAACGTTTCGCAACAAATTCAATCAAAGAATGAGGAGAAGCTAAAATCCCTAAAGGACCGTTTGTTGCTTGAGGAAACGGCTGTACTGAGTATCTAG 3159 0.427 MDSSSDNKIVQASPVPEDPEKKKKKLEKEKEREREKAEKLAKFNKKKEAQQLAQQASNASKKSEKKTAKRGAVVENPEDYIDPETPFGDKKQMSRQLAQKYNPTAVEKSWYEWWEKSKYFVADASSKKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMREKKLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKGVTEAFVRLYKLDLIYRDVRLVNWDCVLRTAVSDIEVDYIEIKERTLLKVPGYDRPVEFGVLKKFAYPLEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYSQFHGKYAVHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHKLEFINVFTDDGKVNSNGGSEFLDMPRFTAREAITEALQKKGLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCRDIAKEALHAVTDEENRRVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQELGAYNDHWVVAKNEEEARDEANQRYNGKKFHLIRDPDVLDTWFSSGLFPLTVLGWPDDTDDLRAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGITLEGLHTRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLTLDNLPFSCQWILSVLNKTISKITKSLELYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDPKFASERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPREFKRAESIMIADYPSATESWNNEKVENEMDLIESTVKSIRSLAKERRDRRPAFALCRTQVVEEIINSHQLEIATLANLSSLTVITKIEAFLSGYADTVVNESLSVYLELQAINSEDARLGKMKKIDELKKQIDRLERSMNVPGYKENVSQQIQSKNEEKLKSLKDRLLLEETAVLSI 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04287 1052 CDD ValRS_core 129 732 - -
Mepo4g04287 1052 PRINTS Valyl-tRNA synthetase signature 608 626 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 PRINTS Valyl-tRNA synthetase signature 459 472 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 PRINTS Valyl-tRNA synthetase signature 577 598 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 PRINTS Valyl-tRNA synthetase signature 131 142 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 PRINTS Valyl-tRNA synthetase signature 342 359 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 Gene3D HUPs 98 296 IPR014729 -
Mepo4g04287 1052 FunFam Valine--tRNA ligase, mitochondrial 424 657 - -
Mepo4g04287 1052 Pfam tRNA synthetases class I (I, L, M and V) 110 733 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo4g04287 1052 Pfam Anticodon-binding domain of tRNA ligase 778 920 IPR013155 GO:0004812|GO:0006418
Mepo4g04287 1052 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 305 454 IPR009008 GO:0002161|GO:0006418
Mepo4g04287 1052 FunFam Valine--tRNA ligase, mitochondrial 305 446 - -
Mepo4g04287 1052 MobiDBLite consensus disorder prediction 15 46 - -
Mepo4g04287 1052 Coils Coil 993 1013 - -
Mepo4g04287 1052 Coils Coil 20 66 - -
Mepo4g04287 1052 Coils Coil 897 917 - -
Mepo4g04287 1052 Hamap Valine--tRNA ligase [valS]. 97 1051 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 Gene3D - 738 921 - -
Mepo4g04287 1052 MobiDBLite consensus disorder prediction 62 89 - -
Mepo4g04287 1052 MobiDBLite consensus disorder prediction 1 91 - -
Mepo4g04287 1052 FunFam Valine--tRNA ligase, mitochondrial 99 297 - -
Mepo4g04287 1052 PANTHER VALYL-TRNA SYNTHETASES 75 1046 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 CDD Anticodon_Ia_Val 732 871 IPR033705 -
Mepo4g04287 1052 SUPERFAMILY Nucleotidylyl transferase 97 742 - -
Mepo4g04287 1052 Gene3D - 305 450 IPR009008 GO:0002161|GO:0006418
Mepo4g04287 1052 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 138 149 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo4g04287 1052 Gene3D HUPs 486 731 IPR014729 -
Mepo4g04287 1052 NCBIfam valine--tRNA ligase 98 1036 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Mepo4g04287 1052 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 744 992 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo4g04287 1052 FunFam Valine--tRNA ligase, mitochondrial 687 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04287 Mepo-Chr4 52655160 52666343 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04287 K01873 - gmx:100798111 1781.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04287 4 52655160 52666343 Mepo4g04287 4 52655160 52666343 ECH