LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g04257	ATGGGTAAGCAAAAGCAACAAGTAATTTCCCGTTTCTTCGCCCCAAAACCCAAAACCCCTTCATCAACCACCGACCCACCACCACCGCCACCATCTTCCTCTCCCAAAATCACCACCACCGTCAATTTCTCACCAGCCAAACGTCGCTTAATCTCTCAACTCACGGCATCCCCTAACAAACAACCCAAACTCTCTTCACCCACTCCCTCTCTCCACCAACGCTTCCTCCAGAAGCTTCTAGAACCTTCTAATCCAACCCTACAACCTCCTTCATCTTCCAAACCTGTAAAGTTCACTCCTTTAGAGCATCAGGTAGTGGAACTCAAAGCTAAATACCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATCGATTTTTCGGCGAAGATGCTGAGAATGCTGCTAGGGTTTTGGGTATTTATGCTCACATGGATCATAATTTTTTAACTGCTAGCATACCAACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTCAGTGCAGGGTATAAAGTTGGTGTTGTTAAGCAGACTGAGACTGCTGCTATTAAGTCCCATGGTTTGAATCGGGCCGGCCCATTCTGTCGAGGTTTGTCGGGGTTGTATACAAAGGCCACACTTGAGGCGGCACATGATATGGGGGGAGGGGAAGATCAGTGTGGGACCGTGAATAATTATTTGTTGTGTGTTGTGGAGAAGACTATTTTGGGAGAGAAAAAATTGAATTGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGGATTGTTGGCGTGGAGATATCGACGGGAGATGTTGTTTATGGAGAGTTTGATGATAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGCTTGTCTCCTGCTGAGTTGCTTCTTGGAGACCCTCTTTCGAAACAAACTGAGAAGTTATTACTGGCTTTTGCTGGACCCTCCTCAAATGCTCGTGTGGAGCGTGCCTCACGAGATTGCTTCACCGACGGAGGCGCTTTTGCTGAAGTTATGACTTTGTATGAGAATGCACATGCTGACAGTCCAGATTCAATGCAAAACAATGAAATGACTGAGCTTGGAAGTCAGCAGATGGTAGTGAAGGAGGTGATGAACCTGCCTGATTTGGCCGTTGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGGATTCGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGGCCCTTCGTAAGCAATACAGAAATGACTCTCTCAGCTAATACACTTCAACAACTGGAGGTTTTACAAAATAACAGTGATGGATCTGCGAGTGGTTCCTTGCTGCAAGTTATGAATCACACTCTTACTATATTCGGTTCCAGGCTTCTTAAGCATTGGGTATCACACCCATTGTGTGATCAAACCTTGATTGCTGCTCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGTATGAAGAATCTTGGACGCTTTGAGGAAGATTCTGATGTAGCAATTGTGCAGCCTGAGTTAGCGCACATACTTTCATTGGTTTTGACATCCCTGGGCCCGGCACCTGATATACAGCGTGGGATTACAAGAATTTTTCATCGCACTGCTACCCCATCTGAGTTTATCGCCATTGTTCAAGCTATTTTATCTGCTGGAAAACGGCTTCATCAACTTAACATAGGAGAGGGTGATAATAATGACAATAATAAATTGCGCTCTGATTTGTTAAAGAAGTTAATTTCAACTGCATCCTCTACAAGTGTTATTGGTAATGCTGCAAAAATGCTGTCATCTCTAAATGAAGACTCTGCTTGCCAAGGAGATTGGACAAATATGATCATTGCAACTGAGGAGCAATTTCCAGAGGTAATTACAGCTCGAAAGGCTTTTCAGATGGCAGTGGAACATTTAGATTCGTTGATTGACTTGTACCGCAAACGTCTCGGAATGCGGAAATTGGAATATATGTGTGTTTCTGGTGTAACTCACTTGATAGAGTTATCAACTGATGTAAAAGTGCCTTTAAATTGGGTTAAAGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGAGTTATCATTAGCGAAAGAGAAGCTTACTGTTGCCTGCCGAGCTGCATGGGATAGCTTTCTGAGGGATTTCAGTAAACACTATGCTGAGTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTAGATTGCCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTCCGCCCTGTTTTTGTAGATGATCATGAGCCTGTTCAGATGCAAATTTGTTCTGGTAGACATCCAGTTTTGGAGACTACCTTACAAAATAATTTTGTTCCAAATGATACAAGCATGCACGCCGATAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGGGGCAAAAGTTGCTATGTTCGTCAAGTATCTCTGATTGCTCTCATGGCTCAGGTTGGTTCCTATGTACCAGCATCATCAGCAAAACTGCATGTCCTGGACGGGATATACACCCGGATGGGCGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTGAGCGAGACTTCACACATACTTCATAGATGTACAGGACGTTCACTGGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACGCATGATGGCATGGCAATTGCTTATGCAACATTACATTATCTTCTGAAGCAGAAGAAAAGCTTGGTCCTATTTGTCACTCATTATCCAAAGATTGCTAGCCTGGAAACTGAATTTCCAGGCTCTGTAGCAGCATATCACATGTCACATCTGACCTCACACGATGATGCGAGTAAAAACTCCAACGATCATGAAGATGTCACTTATCTATATAAACTCGTACCTGGTGTTTCTGAGAGAAGTTTTGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCATCGCATTGCATTAGCCGAGCTATTGTCATGGCCTCCAAATTAGAAGCACTAGTAAACAGCAGAATACATGGTAGATCAGGAAAAGAGTTGTTGGGTGAACCTGTTATCGATCAAGAGCAAGAATTACACCACTGTCCGCATCAAGAATTTGGTAGAGCATATAAAGAATTCTATTCAAACTTACAAGCTACAATATTAGACGATGATGATGATGATGACGACCATGTAAAAAGCTTTCAACTTTTAGAGAATGCAAGAAGCATTGCAAAGACGTTAGTTAGCAGGTCAATTCGGTTTATATAA	3246	0.4279	MGKQKQQVISRFFAPKPKTPSSTTDPPPPPPSSSPKITTTVNFSPAKRRLISQLTASPNKQPKLSSPTPSLHQRFLQKLLEPSNPTLQPPSSSKPVKFTPLEHQVVELKAKYPDVLLMIEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKSHGLNRAGPFCRGLSGLYTKATLEAAHDMGGGEDQCGTVNNYLLCVVEKTILGEKKLNCGVEGGFDVRIGIVGVEISTGDVVYGEFDDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTDGGAFAEVMTLYENAHADSPDSMQNNEMTELGSQQMVVKEVMNLPDLAVEALALTIRHLKGFGFERILCSGALRPFVSNTEMTLSANTLQQLEVLQNNSDGSASGSLLQVMNHTLTIFGSRLLKHWVSHPLCDQTLIAARLNAVSEIAESMGTCNGMKNLGRFEEDSDVAIVQPELAHILSLVLTSLGPAPDIQRGITRIFHRTATPSEFIAIVQAILSAGKRLHQLNIGEGDNNDNNKLRSDLLKKLISTASSTSVIGNAAKMLSSLNEDSACQGDWTNMIIATEEQFPEVITARKAFQMAVEHLDSLIDLYRKRLGMRKLEYMCVSGVTHLIELSTDVKVPLNWVKVNSTKKTIRYHPPEVVTALDELSLAKEKLTVACRAAWDSFLRDFSKHYAEFQASVQALAALDCLHSLAILSRNKGYVRPVFVDDHEPVQMQICSGRHPVLETTLQNNFVPNDTSMHADREYCQIVTGPNMGGKSCYVRQVSLIALMAQVGSYVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHLTSHDDASKNSNDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSGKELLGEPVIDQEQELHHCPHQEFGRAYKEFYSNLQATILDDDDDDDDHVKSFQLLENARSIAKTLVSRSIRFI	1081

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo4g04257	1081	SUPERFAMILY	DNA repair protein MutS, domain I	93	207	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Gene3D	-	411	743	-	-
Mepo4g04257	1081	Gene3D	-	751	1023	IPR027417	-
Mepo4g04257	1081	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	751	996	IPR027417	-
Mepo4g04257	1081	FunFam	DNA mismatch repair protein	88	219	-	-
Mepo4g04257	1081	FunFam	DNA mismatch repair protein MSH3	751	1022	-	-
Mepo4g04257	1081	SMART	DNAend	429	778	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	SUPERFAMILY	DNA repair protein MutS, domain II	224	424	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Pfam	MutS domain V	798	996	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	FunFam	DNA mismatch repair protein Msh3	593	719	-	-
Mepo4g04257	1081	Gene3D	-	593	719	-	-
Mepo4g04257	1081	SMART	mutATP5	795	993	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	FunFam	DNA mismatch repair protein	222	406	-	-
Mepo4g04257	1081	SUPERFAMILY	DNA repair protein MutS, domain III	413	748	IPR036187	-
Mepo4g04257	1081	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	103	1018	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Mepo4g04257	1081	MobiDBLite	consensus disorder prediction	20	35	-	-
Mepo4g04257	1081	Pfam	MutS domain I	99	209	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	PIRSF	Msh6	85	1049	IPR017261	GO:0006298\|GO:0030983
Mepo4g04257	1081	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	876	892	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Gene3D	MutS, connector domain	222	408	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Pfam	MutS domain III	414	743	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Pfam	MutS domain II	226	386	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	Gene3D	DNA repair protein MutS, domain I	90	217	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mepo4g04257	1081	MobiDBLite	consensus disorder prediction	52	71	-	-
Mepo4g04257	1081	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g04257	Mepo-Chr4	52367086	52377209	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo4g04257	K08736		-	gmx:100789883	1603.19

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo4g04257	4	52367086	52377209	Mepo4g04257	4	52367086	52377209	ECH