Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04246 ATGAATTCAATAGCCCTTTTAGGTTTAAGGAAAAGGGTTGTCCACAAAATTTTTCATTGTTTTGTTATTTCGCGGAGATTGTGTGAGGATACGTTTGCTGGTAGTAATAATAATGGGTTTGAATGTATTGAGGAGCCTTTGAAGAAAATAGTTTCTGATTTTGATTCTAATTTGGATAAAGGTTTTCATTTGAATGAGGATTCGAGTTTTGATCAAAATCCGTTTTCGCTTAGACAAGGGTTCATTGAAAGTGTGAAGTTAGATGCTAAGAGGGCTCTTGAGGTTCTTAGACAAGATGGTCCTGGTTTAGATGCTAGGTTGGTTTTAGAGGAGTTGGGTATAAGACCTTCGGGTATTCTTGTTAGAGAGGTTCTCTTTGGAATTTTGAAGAATATAAATAGTGAGAATAAGACCAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTGGTCAGCAGGAGGATTATCGGCACACAGTGAATGCCTATCACTTGATTATGAACATATATGCTGAGTGCAAAGAGTTTAAGGCGTTGTGGAGGTTGGTCGATGAGATGATTGGGAAAGGTTATAAGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGCGAGGCGGGCCTGGCTAAGACATTGGTGGAGAGGTTCATAAAATCGAAGTCCTTTAACTATAGGCCTTTTAAGCATTCCTATAACGCAATTCTACACAGTTTTCTCGTGCTAAACCAGTACAAATTGATTGAGTGGGTTTATGAACAAATGTTACTTAATGATTTTTCATCAGATATTTTAACTTATAATATTGTCATTTATGCCAAGTACAGACTTGGAAAGATGGATCAGGTCCGCACACTGCTTAGTGAGATGGATAGAAATGGAATTTCTCCAGATTTTCATACCTACAACATTCTTCTTCATGCTATCGGTAAAGGGGATCACGGTAAAGGGGATCTCGATAAAGAGGATCTCGGTAAAGAAAAGGAACAATTTAAAGCTCTTAAACTTTTGAATTACATGAGAGAAACAGGTATAGAGCCTACTGTACTTCATTTCACCACATTGATAGATGGATTCAGCAGAGCCGGGAAACTGGATGCCTGCAAATATTTTTTCAATGAAATGAAAAAGAATGGGTGCATGCCTGATGTGGTGGCTTATACTGTTATGATAACCGGATATGTAGTGGCACGTGAGCTTGAGAAAGCGCAGGAAATGTTTCAAGAAATGATTTCCAAGGAACTAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGATTATGCATGGCAGGGAAATTCGACGAAGCATGCTCAATGTTCAAGGAAATGGAAAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGAGTTGTTTGCGGAATGCTGGAAGGGTTGCTGATGCTCGTGAGGTGATAAAACAAATGACGGAGACAGGGAAGTATGCCCATTTACTTTCAAGATTCGAAGGGTATAAGATGTAG 1500 0.3867 MNSIALLGLRKRVVHKIFHCFVISRRLCEDTFAGSNNNGFECIEEPLKKIVSDFDSNLDKGFHLNEDSSFDQNPFSLRQGFIESVKLDAKRALEVLRQDGPGLDARLVLEELGIRPSGILVREVLFGILKNINSENKTRCAKLAYKFFVWCGQQEDYRHTVNAYHLIMNIYAECKEFKALWRLVDEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLNDFSSDILTYNIVIYAKYRLGKMDQVRTLLSEMDRNGISPDFHTYNILLHAIGKGDHGKGDLDKEDLGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACKYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFQEMISKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMEKGCSPNSVVYITLVSCLRNAGRVADAREVIKQMTETGKYAHLLSRFEGYKM 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04246 499 SUPERFAMILY TPR-like 243 479 IPR011990 GO:0005515
Mepo4g04246 499 Gene3D Tetratricopeptide repeat domain 324 496 IPR011990 GO:0005515
Mepo4g04246 499 Pfam Pentatricopeptide repeat domain 156 208 IPR002885 -
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Mepo4g04246 499 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 42 313 - -
Mepo4g04246 499 Pfam PPR repeat family 384 432 IPR002885 -
Mepo4g04246 499 Pfam PPR repeat family 265 310 IPR002885 -
Mepo4g04246 499 NCBIfam pentatricopeptide repeat 456 485 IPR002885 -
Mepo4g04246 499 NCBIfam pentatricopeptide repeat 387 421 IPR002885 -
Mepo4g04246 499 NCBIfam pentatricopeptide repeat 354 386 IPR002885 -
Mepo4g04246 499 NCBIfam pentatricopeptide repeat 422 454 IPR002885 -
Mepo4g04246 499 NCBIfam pentatricopeptide repeat 268 300 IPR002885 -
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Mepo4g04246 499 Gene3D Tetratricopeptide repeat domain 118 242 IPR011990 GO:0005515
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 450 IPR002885 -
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Mepo4g04246 499 Pfam PPR repeat 449 482 IPR002885 -
Mepo4g04246 499 Pfam PPR repeat 346 378 IPR002885 -
Mepo4g04246 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Mepo4g04246 499 Gene3D Tetratricopeptide repeat domain 248 323 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04246 Mepo-Chr4 52288773 52290967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04246 269 492 Miscellaneous Gene Families AT4G11690 28.319 3.66e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04246 - - gmx:100792512 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04246 4 52288773 52290967 Mepo4g04246 4 52288773 52290967 ECH