Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00414 ATGCCTACTCATTCCCCTGATGTATCTACAGGAATAGGGGAGTGTTTCTATGCAGCTTTGATGCCACTCTTAGCTGTCTTTGAGGTTTTGGTCTTTGCTGTCACAGGTTGTTTCAATTCTCATCTTCCCAATTTTCACACTCAAAAATCTGCTTATACTGCTAAAGACTTCTTACGCCTTGCTCAAGAAACCAGATTTACTGTTAATGAAGTTGAAGCATTGCATGAGCTATTTAAAAAGATAAGTAGCTCTGTAATTGATGATGGCTTGATTCACAAGGTGGAGCTTCAATTAGCACTATTTCAAACCCCAAATGGAGAAAATCTTTTTCTGGATCGAGTTTTTGATATTTTTGATGAAAAGAGAAACGGCGTTATTGAGTTTGATGAATTTGTCCATGCGCTCAGTGTTTTCCATCCTTACGCCCCTATGGATGAAAAAATAGATTTTGCATTTAAGCTCTATGACCTGAGACAAACAGGGTTTATTGAGCCAGAGGAAGTGAAGCAAATGGTTATAGCTATTTTGGTGGAATCTGAAATGAATCTTTCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCCGACGTTGATCAAGACAATGATGGTAAAATCAGCAAAGAAGATTGGAAAACTTTTGTGAGTCGAAATCCGTCTCTCTTGAAGAACATGACACTTCCTTATTTGAAGGATATCACCACTGCGTTTCCAAGTTTTATTTTCAAATCAGAGGCCGGAAATTGA 750 0.3787 MPTHSPDVSTGIGECFYAALMPLLAVFEVLVFAVTGCFNSHLPNFHTQKSAYTAKDFLRLAQETRFTVNEVEALHELFKKISSSVIDDGLIHKVELQLALFQTPNGENLFLDRVFDIFDEKRNGVIEFDEFVHALSVFHPYAPMDEKIDFAFKLYDLRQTGFIEPEEVKQMVIAILVESEMNLSDDLLEAIVDKTIADVDQDNDGKISKEDWKTFVSRNPSLLKNMTLPYLKDITTAFPSFIFKSEAGN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00414 249 Gene3D - 58 249 - -
Mepo4g00414 249 SUPERFAMILY EF-hand 60 240 IPR011992 -
Mepo4g00414 249 PANTHER CALCINEURIN B 35 247 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mepo4g00414 249 SMART efh_1 147 175 IPR002048 GO:0005509
Mepo4g00414 249 SMART efh_1 191 219 IPR002048 GO:0005509
Mepo4g00414 249 SMART efh_1 110 138 IPR002048 GO:0005509
Mepo4g00414 249 CDD EFh 147 217 IPR002048 GO:0005509
Mepo4g00414 249 FunFam calcineurin B-like protein 3 56 249 - -
Mepo4g00414 249 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Mepo4g00414 249 Pfam EF-hand domain pair 114 132 IPR002048 GO:0005509
Mepo4g00414 249 PRINTS Recoverin family signature 161 179 - -
Mepo4g00414 249 PRINTS Recoverin family signature 207 227 - -
Mepo4g00414 249 PRINTS Recoverin family signature 114 135 - -
Mepo4g00414 249 ProSiteProfiles EF-hand calcium-binding domain profile. 187 222 IPR002048 GO:0005509
Mepo4g00414 249 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Mepo4g00414 249 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Mepo4g00414 249 CDD EFh 111 172 IPR002048 GO:0005509
Mepo4g00414 249 Pfam EF-hand domain pair 146 215 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00414 Mepo-Chr4 6087454 6093180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00414 30 246 EF-hand Containing Proteins AT5G55990 59.908 3.18e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00414 K06268 - gmx:100810494 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00414 4 6087454 6093180 Mepo4g00414 4 6087454 6093180 ECH