Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g08061 ATGAAGATGAGGTTGGCACTAGTAACAACAACTCTACTTCTAATTATAGGATGCTCCTTTGCGGAGCAATGCGGTAAACAAGCTGGGGGTGCGTTGTGCCCCGGGGGATTATGTTGCAGCAAGTTTGGTTGGTGCGGATCAACTAGCGACTACTGCGGTGATGGTTGTCAGAGTCAATGTAGTGGAAGCAGCGGTGGTGGTGGTGACCTTGGTAGCCTCATCTCTAGAGACACCTTCAACAATATGCTCAAGCATCGCGAGGACAGTGGGTGTCAGGGGAAAGGATTGTACACCTATGATGCTTTCATCTCAGCGGCCAAGGCTTTCCCCAACTTTGCCAATAACGGAGATACTACCACTAAAAAAAGAGAGATTGCTGCTTTCTTGGGTCAAACATCACACGAAACCACGGGTGGATGGGCAACTGCACCTGATGGCCCATATGCTTGGGGATACTGCTTTGTGAAAGAACAGAATCCCAGCACATACTGCCAACCAAGCTCTGAATTCCCGTGTGCTTCTGGGAAGCAATACTACGGTAGGGGTCCCATCCAGATCTCTTGGAATTACAACTATGGACAGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAACAATCCAGACCTTGTAGCCACCGACCCTGTTATATCCTTCAAGACTGCTCTGTGGTTTTGGATGACTCCCCAGTCACCTAAGCCATCCTGCCACGACGTTATCACTGGAAGATGGAGTCCTTCCAGTGCAGATCGTGCAGCAGGGAGGCTCCCGGGATACGGTACAGTGACCAACATAATAAACGGAGGGCTTGAATGCGGCAGAGGACAGGATGGAAGAGTGCAGGATCGAATTGGATTTTACAAGAGATATTGTGACATACTTGGAGTTGGATACGGAGACAATCTTGATTGTTTTTCCCAAAGACCTTTCGGATCTTCACTTTCATTATCATCCCTCTTCCTCACTCTCAACTCCATCGACACCTAG 984 0.4878 MKMRLALVTTTLLLIIGCSFAEQCGKQAGGALCPGGLCCSKFGWCGSTSDYCGDGCQSQCSGSSGGGGDLGSLISRDTFNNMLKHREDSGCQGKGLYTYDAFISAAKAFPNFANNGDTTTKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVKEQNPSTYCQPSSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGRWSPSSADRAAGRLPGYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGDNLDCFSQRPFGSSLSLSSLFLTLNSIDT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g08061 327 PRINTS Chitin-binding domain signature 31 39 IPR001002 GO:0008061
Mepo3g08061 327 PRINTS Chitin-binding domain signature 39 46 IPR001002 GO:0008061
Mepo3g08061 327 PRINTS Chitin-binding domain signature 46 53 IPR001002 GO:0008061
Mepo3g08061 327 ProSitePatterns Chitin recognition or binding domain signature. 33 52 IPR018371 GO:0008061
Mepo3g08061 327 Pfam Chitinase class I 73 303 IPR000726 GO:0004568|GO:0006032|GO:0016998
Mepo3g08061 327 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Mepo3g08061 327 ProSitePatterns Chitinases family 19 signature 2. 216 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Mepo3g08061 327 Gene3D Endochitinase, domain 2 156 212 - -
Mepo3g08061 327 ProSiteProfiles Chitin-binding type-1 domain profile. 21 62 IPR001002 GO:0008061
Mepo3g08061 327 FunFam Basic endochitinase 21 62 - -
Mepo3g08061 327 Gene3D - 73 303 - -
Mepo3g08061 327 CDD ChtBD1_GH19_hevein 22 54 - -
Mepo3g08061 327 SUPERFAMILY Plant lectins/antimicrobial peptides 23 62 IPR036861 GO:0008061
Mepo3g08061 327 CDD chitinase_GH19 74 303 - -
Mepo3g08061 327 Pfam Chitin recognition protein 23 60 IPR001002 GO:0008061
Mepo3g08061 327 Gene3D - 21 63 IPR036861 GO:0008061
Mepo3g08061 327 SMART ChitinBD_3 23 60 IPR001002 GO:0008061
Mepo3g08061 327 FunFam Endochitinase (Chitinase) 155 212 - -
Mepo3g08061 327 SUPERFAMILY Lysozyme-like 70 310 IPR023346 -
Mepo3g08061 327 PANTHER CHITINASE-RELATED 10 307 - -
Mepo3g08061 327 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g08061 Mepo-Chr3 93387578 93388810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g08061 21 318 Glycoside Hydrolase AT3G12500 69.967 1.95e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g08061 K20547 - pop:7474965 491.5