Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g08057 ATGTGGTCATCATCGTCGTCGTCGTGCTTATTGCCACAATTCATCTGCAATCCAGACACTTTCATCAGAATCCCTATCCACCGCCATCATCATTATCATCAGCTCTTTCTTCTTCAATCACCCAAAACAACAACAACAACAACAACAAGACACTGTATTTTGACTTCTTCAACGGCACTCCTTGATTTCAAATTCGATTCTCCTGCTGCTCAATCTGAAAGCGCACCACCTTGGCCCTATGTCTCTCAGGCAAACTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATTGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCTAAGGATGCTACTCTCTTGGTCAGTAACAAGCCCCCCTCACATCTTAATCAACAACCACCGCTACTTCCTTCCACCCCTGAAAATTTACTTCTTAAATGGGTTCAACACATGGAAGCAACCGAAGATGCTGCTTCTGCTGCTGTATCATCCATTGCCACTGGACCAGGACCAGATATAATGGAACATCTTCATATTAGCCCCAACCAAGAGGAGGACTTTAACTATGACGACGAGCCTACCTCTGAGGAACTTGAGGATGTAGAGGAACAACTTTTTGATACTAGTATAGATGCAAGATCCGGGCGCCAAACTGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGATCCACCACCAGGAAAAAGCGTGTTCGTGCACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGATCAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAGTTAAGTTCTCTGAAGGAATACAGGACCTCATAAAGCTCGAAAAACTTCAAGAGGATCTTGCAGAAAAATGTGGTGGCCAGCCCACATTTGCTCAATGGGCCACAATGGCAGGGGTAGATCAAAAGACTCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATCCGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTATAAGAGGTTCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAGGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAATTGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAGCAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTGGTTTCGTAA 1725 0.4377 MWSSSSSSCLLPQFICNPDTFIRIPIHRHHHYHQLFLLQSPKTTTTTTTRHCILTSSTALLDFKFDSPAAQSESAPPWPYVSQANSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLVSNKPPSHLNQQPPLLPSTPENLLLKWVQHMEATEDAASAAVSSIATGPGPDIMEHLHISPNQEEDFNYDDEPTSEELEDVEEQLFDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRAQEVDYSDPLRYLRSTTRTTRLLTPSEEVKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLIRGSEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVREARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQSLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYLVS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g08057 574 Gene3D RNA Polymerase Primary Sigma Factor 147 412 - -
Mepo3g08057 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 408 459 IPR013324 -
Mepo3g08057 574 NCBIfam sigma-70 family RNA polymerase sigma factor 338 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 ProSitePatterns Sigma-70 factors family signature 2. 533 559 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 Gene3D - 413 490 IPR036388 -
Mepo3g08057 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 571 IPR013324 -
Mepo3g08057 574 Gene3D - 494 574 IPR036388 -
Mepo3g08057 574 CDD Sigma70_r4 502 560 - -
Mepo3g08057 574 PRINTS Major sigma-70 factor signature 533 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 PRINTS Major sigma-70 factor signature 548 559 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 PRINTS Major sigma-70 factor signature 364 377 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 PRINTS Major sigma-70 factor signature 388 396 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 PRINTS Major sigma-70 factor signature 512 524 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 Pfam Sigma-70, region 4 508 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 Pfam Sigma-70 region 2 340 409 IPR007627 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 Pfam Sigma-70 region 3 421 495 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mepo3g08057 574 PIRSF Sigma_factor_SigC 1 574 IPR016262 -
Mepo3g08057 574 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 91 572 - -
Mepo3g08057 574 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 261 410 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g08057 Mepo-Chr3 93343122 93346820 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g08057 - - aprc:113864822 707.983