Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07988 ATGGCCGGTGATTCATCTGTAATGCTCAATGGCAATGTCAGCATCAACCTACAGAGGACTTACCAAGTGGTTGTGGCTGCCACCAAAGAAATGGGCATTGGTAAGGATGGGAAATTACCATGGAGACTACCCACCGATCTCAAGTTTTTCAAGGAGATAACTACTACAACATCCGAACCTGGGAAGAAAAATGCCATTGTCATGGGAAGAAAAACATGGGAGAGTATCCCTCTTCACTTCAGGCCTCTTCCTGGTCGTCTTAATGTTGTTTTGACTCGCTCAGGTACCTTTGATATTGCAGCAGCAGAAAATGTTGTTATATGTGGAAGTATGTTGTCTGCATTGGAACTCTTAGCGGCTTCTCCTTATCACACGTCGATTGAGAAAATATTTGTTATTGGGGGTGGTGAGATATATAGGGAGGCTCTCAATGCACCCGAATGTGAAGCTATCCACCTCACAGAAATTCATCCAAGCATTGAGTGTGATACTTTTATGCCTCCAATTGACACCACTATATTTCGGCCATGGTACTCATCCTTTCCTAAGGTGGAAAACAACATCCGATATTCGTTCACCACTTATGTGCGTGTAAGGAGTTCTGCAGTAGAGTCCCCAAGTCAGAGTACTGATTCACTTTTTGATAGTAATTCGGCTTCTAAAAAATTTGAGGTTCAGAACTTTTCTTTTCTTCCGAAAATGATTTTTGAGAGACATGCGGAGTACATGTATCTTAATCTGGTTCAAGAAATCATATCTCAAGGTACCACTAAGGGTGATAGGACAGGGACCGGGACCTTGTCAACATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAAGCTTTCCTCTTCTATCAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGCGGCTCAACAAATGCCAAGGTGTTGCAGCAAAAAGGCATTCATATATGGGATGATAATGCATCCAGGGAATTCCTTGATAGCATTGGTTTGTCAGAGAGGGAAGAGGGTGATTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAAGTATACTAACATGCATAGTGACTATGCCAACCAAGGACTTGATCAGCTTTTAGATGTTATCAACAAGATAAAGCATAGTCCTGATGATCGACGAATCATTCTCTCTGCATGGAATCCAGCAGATCTTAAATTGATGGCTCTTCCACCCTGCCACATGTTTGCGCAGTTCTATGTAGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGTGTGCCATTTAACATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATATTTGTGAACTTGTTCCAGGTGATTTTATCCATGCTATTGGGGATGCACATGTGTACCAAACTCATGTGAGGCCTTTGCAGGAGCAGCTTCATAACCTGCCAAAACCTTTTCCAACTTTGAAGATCAATCCAAAGAAGAAAGATATAGATTCTTTTGTGGCTACTGATTTCAAGCTCATTGACTACGATCCTCACCAGAAGATTGAGATGAAAATGGCTGTCTAA 1575 0.4267 MAGDSSVMLNGNVSINLQRTYQVVVAATKEMGIGKDGKLPWRLPTDLKFFKEITTTTSEPGKKNAIVMGRKTWESIPLHFRPLPGRLNVVLTRSGTFDIAAAENVVICGSMLSALELLAASPYHTSIEKIFVIGGGEIYREALNAPECEAIHLTEIHPSIECDTFMPPIDTTIFRPWYSSFPKVENNIRYSFTTYVRVRSSAVESPSQSTDSLFDSNSASKKFEVQNFSFLPKMIFERHAEYMYLNLVQEIISQGTTKGDRTGTGTLSTFGCQMRFNLRRSFPLLSTKRVFWRGVVEELLWFISGSTNAKVLQQKGIHIWDDNASREFLDSIGLSEREEGDLGPVYGFQWRHFGAKYTNMHSDYANQGLDQLLDVINKIKHSPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHICELVPGDFIHAIGDAHVYQTHVRPLQEQLHNLPKPFPTLKINPKKKDIDSFVATDFKLIDYDPHQKIEMKMAV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07988 524 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 20 197 IPR001796 GO:0004146|GO:0046654
Mepo3g07988 524 Pfam Dihydrofolate reductase 22 197 IPR001796 GO:0004146|GO:0046654
Mepo3g07988 524 ProSitePatterns Thymidylate synthase active site. 386 414 IPR020940 GO:0004799|GO:0006231
Mepo3g07988 524 Hamap Thymidylate synthase [thyA]. 241 524 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 SUPERFAMILY Dihydrofolate reductase-like 18 197 IPR024072 -
Mepo3g07988 524 Gene3D Dihydrofolate Reductase, subunit A 8 200 IPR024072 -
Mepo3g07988 524 NCBIfam thymidylate synthase 243 524 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 CDD TS_Pyrimidine_HMase 244 477 IPR023451 -
Mepo3g07988 524 PIRSF DHFR-TS 5 524 IPR012262 GO:0004146|GO:0004799|GO:0006730
Mepo3g07988 524 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 217 524 IPR036926 -
Mepo3g07988 524 CDD DHFR 24 196 IPR001796 GO:0004146|GO:0046654
Mepo3g07988 524 PRINTS Thymidylate synthase family signature 457 474 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 PRINTS Thymidylate synthase family signature 282 303 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 PRINTS Thymidylate synthase family signature 401 416 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 PRINTS Thymidylate synthase family signature 375 394 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 PRINTS Thymidylate synthase family signature 419 445 IPR000398 GO:0004799|GO:0006231
Mepo3g07988 524 Pfam Thymidylate synthase 243 524 IPR023451 -
Mepo3g07988 524 PANTHER THYMIDYLATE SYNTHASE 1 43 524 IPR045097 GO:0016741
Mepo3g07988 524 FunFam Possible thymidylate synthase 235 524 - -
Mepo3g07988 524 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 32 54 IPR017925 GO:0004146
Mepo3g07988 524 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 5 198 - -
Mepo3g07988 524 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 233 524 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07988 Mepo-Chr3 92706603 92712508 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07988 K13998 - gmx:100786329 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07988 3 92706603 92712508 Mepo3g07988 3 92706603 92712508 ECH