Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07826 ATGTTATCGCTTAACACCTCATGTGGATTTTGCGGTGTTTCCACAGCAACAAAAGCATTCCAATTTCACTTTCGAACTTCATCTTCACCATTTTACTTCTCTCCCATTGCAAAATCCGTTTCTACTTTCTCCAATGATTCGAACTCCACCGAAGAACCAAAATCGAATTACGCCGGCGTGCGATTGGAAGAAGTCGTCGGCGACGGTGGAATCAAATCTGGAAAATTGAGACTCGATAGTTGGATCTCTTCTCGCATCAATGGCATCAGTAGAGCTCGTGTCCAATCAAGTATTAAAGCTGGACTCGTTCATGTCAATGGCCGTGTTGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAGATCAAGTGTACAATTGCAGAGTTGCAGCAGTTGAGAGCTGTGCCGGAAAACATACCTCTGGATATAGTTTATGAAGATGACCATTTGCTAGTCATAAATAAACCTGCTCACATGGTTGTGCATCCAGCACCTGGCAATACGTCTGGGACGCTTGTAAATGGCATTCTGCACCATTGCAACCTGCCAAATGTTCAATTTTCTAAAGAGGAAGCTCTCTCAGATACGGAAGATTCTGATGATGAACTTAATGGTTTCTCATCCCAGTCAAGTTCTTCTGAAGGGTTAGATTCTAGATTGTCTATGGCATCAATTCGCCCAGGGATTGTACACAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTTGCTAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTACGCACTATCAAGAGGGTCTACGTTAGTCTCACTGCTGGGGTACCTACTCCAGTTTCTGGACGCGTTGAGGTTCCTGTTGGCCGTGATCCTAATAACCGGCTTCGTATGATCGCTGTAGCTGGACTAGTTAATTCTGTGAAGGCCCGTCATGCGGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATTCGTGCGCATGCCAAGTATTTGGGTGTGCCTTTGCTAGGTGATGAGGTATATGGAGGGACGAAAAGCATGGTCTTGTCATTGCTACGGCCACGAACAACTCCGAGTTTGCATAGCGAAATGTTTAAAACAGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGTGAGCCCCCTGTAGATTTTAATGACATTTTGAGCAAGCTTCGTAGAATTGGTAGTGAAAGTATTTCTCACTCAAAGGCCAAATTTTTAAAAGGGGTATTGTAA 1341 0.443 MLSLNTSCGFCGVSTATKAFQFHFRTSSSPFYFSPIAKSVSTFSNDSNSTEEPKSNYAGVRLEEVVGDGGIKSGKLRLDSWISSRINGISRARVQSSIKAGLVHVNGRVVDKVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVQFSKEEALSDTEDSDDELNGFSSQSSSSEGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSLHSEMFKTVSELDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFNDILSKLRRIGSESISHSKAKFLKGVL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07826 446 CDD PseudoU_synth_RluA_like 151 400 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo3g07826 446 Gene3D Pseudouridine synthase 197 430 - -
Mepo3g07826 446 Gene3D Pseudouridine synthase 143 195 - -
Mepo3g07826 446 MobiDBLite consensus disorder prediction 204 219 - -
Mepo3g07826 446 SMART s4_6 76 141 IPR002942 GO:0003723
Mepo3g07826 446 Gene3D - 71 132 IPR036986 GO:0003723
Mepo3g07826 446 CDD S4 77 155 - -
Mepo3g07826 446 MobiDBLite consensus disorder prediction 191 219 - -
Mepo3g07826 446 Pfam RNA pseudouridylate synthase 150 345 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo3g07826 446 SUPERFAMILY Pseudouridine synthase 136 427 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo3g07826 446 SUPERFAMILY Alpha-L RNA-binding motif 75 163 - -
Mepo3g07826 446 ProSitePatterns Rlu family of pseudouridine synthase signature. 231 245 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo3g07826 446 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 80 423 - -
Mepo3g07826 446 Pfam S4 domain 77 123 IPR002942 GO:0003723
Mepo3g07826 446 ProSiteProfiles S4 RNA-binding domain profile. 76 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07826 Mepo-Chr3 91360390 91365392 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07826 K06180 - gmx:100810383 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07826 3 91360390 91365392 Mepo3g07826 3 91360390 91365392 ECH