Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07615 ATGCATGCCATTGCCATGGATTTCTATGGCAACAGAACCCTCCTCACCTTAATGGACAAGGAAAAAACAGAACAACAAGAATCCCCCAACATTCATCTTCATGTCCAAATCCAACCTCACAGAGAAGCAAATGATCAACAAGACATTCAATTTAGTCCACCAAGACCTTCTACCACATTTCCACAATCACCGTGGACACTTTCCTCTCTTCCACCTCCTTCCCCTTCATTACTCTACCATTGCATCGCCTCCCTCCACCGCCATGAAGGAAACATCTACTCCATCGCAGTTTCCAAGGGTTTCATCTTTACAGGTTCCAACAGTAGCCGAATTCGTGTTTGGAAGCAGCCAGATTGCATGGACAAAGGGTATCTCAAATCAAACTCCGGTGAAATCCGCACTATTTTAGCTTATAACAACATGGTTTTCTCCTCACACAAAGATCACAAAATCAGAATATGGAACTTCAACGTTTCAGAAAACTTCAAATCCAAGAAAGTAGCTACTCTTCCTAGAAGAAACAAAAACTCTTTTCTAAACTTCAGCAGAACAAAAAACAACAACTCACACAATTACAAACACAAAGATTTAGTTTCTTGCATGGCTTATTACCATTCAGAAGGACTCTTATACACCGGCTCACACGACAGAACAGTGAAAGCTTGGAGAATCTCTGACAGAAAATGCGTTGACTCATTTCTTGCACATGAAGATCATGTAAACGCTATCTTAGTAAACCAAGACGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGAGTATACACAGAAAACTCACACACATTAACAATGACACTAAAGTTTCAACATTCACCAGTTAACACACTTGCATTGAGTTCTTCATTCAACCATTGTTTCCTCTATTCAGGAAGTTCAGATGGAATGATAAATTTTTGGCAGAAGGAAAGGTTGTGCTATAGGTTTAACCATGGAGGGTTTTTGCAGGGTCACCGTTTCGCGGTACTTTGTGTTGAAACGGTAGGGAACATGGTGTTTAGTGGATCAGAGGATACAACAATAAGAGTGTGGAGAAGAGAGGAAGATAGTTGTTATCATGAGTGTTTGATGGTTTTGGATGGACATAGAGGACCTGTTAGATGTTTGGCTGCTTGTCTTGAGATGGAGAAAGTTGTTGTAGGGTTTTTGGTTTATAGTGCAAGTTTGGACCAAACATTTAAGGTTTGGAGGATTAAGGTTTTTTCTGAGGATGAGAATGTGTGTTTGGATGGTGAAAATAATAAGTCTGATGGGAGAGTAAAGAAGATTAGGGAGTATGATATGAGTCCAGTTTTGTCACCTTCTTGGGTTGAGAAGAAACTTCAGGGTAGTAGTCCCTTTCAGTAA 1383 0.4006 MHAIAMDFYGNRTLLTLMDKEKTEQQESPNIHLHVQIQPHREANDQQDIQFSPPRPSTTFPQSPWTLSSLPPPSPSLLYHCIASLHRHEGNIYSIAVSKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEIRTILAYNNMVFSSHKDHKIRIWNFNVSENFKSKKVATLPRRNKNSFLNFSRTKNNNSHNYKHKDLVSCMAYYHSEGLLYTGSHDRTVKAWRISDRKCVDSFLAHEDHVNAILVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQHSPVNTLALSSSFNHCFLYSGSSDGMINFWQKERLCYRFNHGGFLQGHRFAVLCVETVGNMVFSGSEDTTIRVWRREEDSCYHECLMVLDGHRGPVRCLAACLEMEKVVVGFLVYSASLDQTFKVWRIKVFSEDENVCLDGENNKSDGRVKKIREYDMSPVLSPSWVEKKLQGSSPFQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07615 460 SMART WD40_4 185 223 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 78 115 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 272 313 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 118 155 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 226 265 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 364 409 IPR001680 GO:0005515
Mepo3g07615 460 SMART WD40_4 320 357 IPR001680 GO:0005515
Mepo3g07615 460 CDD WD40 81 409 - -
Mepo3g07615 460 Gene3D - 65 184 IPR015943 GO:0005515
Mepo3g07615 460 MobiDBLite consensus disorder prediction 42 66 - -
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 225 - -
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 264 - -
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Mepo3g07615 460 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 45 413 IPR045182 -
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 85 115 IPR001680 GO:0005515
Mepo3g07615 460 Gene3D - 185 324 IPR015943 GO:0005515
Mepo3g07615 460 MobiDBLite consensus disorder prediction 42 65 - -
Mepo3g07615 460 SUPERFAMILY WD40 repeat-like 80 411 IPR036322 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 137 155 IPR001680 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 188 222 IPR001680 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 366 408 IPR001680 GO:0005515
Mepo3g07615 460 Pfam WD domain, G-beta repeat 326 356 IPR001680 GO:0005515
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 264 IPR001680 GO:0005515
Mepo3g07615 460 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 366 IPR001680 GO:0005515
Mepo3g07615 460 Gene3D - 325 454 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07615 Mepo-Chr3 89451812 89453194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07615 194 413 Miscellaneous Gene Families AT5G08390 23.529 1.56e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07615 - - gsj:114414206 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07615 3 89451812 89453194 Mepo3g07615 3 89451812 89453194 ECH