Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07406 ATGGGTACCCTTACCCTGTCTCTTCTCAAACACTACACACCCTTTTCCTTTTCCACCACACTCTTCACCCACTCATCTCGAACCCTCTCCCCCGGTCACCTTACCGCCGTATTCCGAGGAAAGAATCTTCCCTCCTTCCGCGCCATCTCATCTTCCTCTCAGCCGTTAACTGCGGAGAAAAATTCCCACGACGGTGGTGAAAATTTCCGTTCAAAGAATTCTTCGCCGGAAGTATGGCTTCACAACACAATGAGTAAGAAGAAAGAGATTTTTAAGCCCAAAGTGGAAAAGAAAGTTGGAATGTATGTTTGTGGTGTTACTGCTTATGATCTTAGCCATATTGGTCATGCTCGTGTTTACGTTAATTTCGATCTTCTTTACAGATATTTTAAGCACTTGGGATTTCAAGTTTGTTATGTTCGCAATTTTACTGATGTAGATGACAAGATAATTGCCAGATCGAAGGAGTTAGGAGAAGATCCAATCAGTTTGAGTCGACGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTTTGCCTGCTACCGTGGAACCGAAAGTGTCTGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCGTACAATGTTGATGGGGATATATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAATTATCAAGTCGAGGTCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTACAAAACCAGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCGTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGGATTGACCTTGTATTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAGTAAAAGTGATATTAGTGTATGGATGCACAATGGTTTTGTCACCATTGACTCAGTGAAGATGTCTAAATCTTTGGGAAACTTTTTTACAATACGGCAGGTTGTAGATGTTTACCATCCGCTGGCTTTGAGATATTTTTTGATGAGTGCTCATTATAGATCTCCCATAAACTACTCTAATATACACCTTGAAAGTGCTTCAGATCGTGTTTTTTATATATACGAGACATTACATGAATGTGAAAGCTTTCTGAAGCAGCATGATCAGACAGTTAAGAAAGATTCCGTCCCACCAGATACTTTGAGTATTATCGATAACTTTTATGATGTTTTTCGGACCTCGATGTCTGATGATCTTCACACTCCAGTTGCATTGGCCGGAATGTCTGACCCACTAAAATTAATTAACGACTTGCTGCATACTCGCAAGGGAAAAAAACAGCAATTTCGAATAGAATCACTTGCAGCTTTGAAGAAAAGTATTGGGGATGTCCTTACTGTTTTAGGTCTCATGCCTTCAAGTTATTATGAGGTTTTACAGCAGCTTAAGGAGAAAGCTCTTAACCGTGCAAACTTGACAGAAGATGAAATCTTCAAGAAGATCGAAGAACGGGATGCTGCTAGAATACAAAAGGAGTATGCCAAATCCGATTCCATAAGGAAAGATTTGGCTGTTCTTGGTATTGCTCTTATGGATAGTCCGAATGGCACAACTTGGAGGCCTTCCATTCCTCTTCCACTTCAAGAACAACTCTAG 1719 0.4101 MGTLTLSLLKHYTPFSFSTTLFTHSSRTLSPGHLTAVFRGKNLPSFRAISSSSQPLTAEKNSHDGGENFRSKNSSPEVWLHNTMSKKKEIFKPKVEKKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFQVCYVRNFTDVDDKIIARSKELGEDPISLSRRYCEEFCQDMVTLNCLPATVEPKVSEHMPQIIDMIEKILNNGYAYNVDGDIYFNVEKFPEYGKLSSRGLEDNRAGERVAVDSRKKNPADFALWKSTKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACSKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMSAHYRSPINYSNIHLESASDRVFYIYETLHECESFLKQHDQTVKKDSVPPDTLSIIDNFYDVFRTSMSDDLHTPVALAGMSDPLKLINDLLHTRKGKKQQFRIESLAALKKSIGDVLTVLGLMPSSYYEVLQQLKEKALNRANLTEDEIFKKIEERDAARIQKEYAKSDSIRKDLAVLGIALMDSPNGTTWRPSIPLPLQEQL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07406 572 CDD CysRS_core 79 380 IPR032678 -
Mepo3g07406 572 MobiDBLite consensus disorder prediction 50 74 - -
Mepo3g07406 572 NCBIfam cysteine--tRNA ligase 80 561 IPR015803 GO:0004817|GO:0005524|GO:0006423
Mepo3g07406 572 Gene3D - 381 562 - -
Mepo3g07406 572 FunFam Cysteine--tRNA ligase 77 378 - -
Mepo3g07406 572 Pfam tRNA synthetases class I (C) catalytic domain 91 387 IPR032678 -
Mepo3g07406 572 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 417 561 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo3g07406 572 Hamap Cysteine--tRNA ligase [cysS]. 78 563 IPR015803 GO:0004817|GO:0005524|GO:0006423
Mepo3g07406 572 SUPERFAMILY Nucleotidylyl transferase 78 385 - -
Mepo3g07406 572 PRINTS Cysteinyl-tRNA synthetase signature 101 112 IPR024909 -
Mepo3g07406 572 PRINTS Cysteinyl-tRNA synthetase signature 266 284 IPR024909 -
Mepo3g07406 572 PRINTS Cysteinyl-tRNA synthetase signature 137 146 IPR024909 -
Mepo3g07406 572 PRINTS Cysteinyl-tRNA synthetase signature 297 318 IPR024909 -
Mepo3g07406 572 Gene3D HUPs 61 380 IPR014729 -
Mepo3g07406 572 Coils Coil 497 517 - -
Mepo3g07406 572 PANTHER CYSTEINYL-TRNA SYNTHETASE 73 569 IPR024909 -
Mepo3g07406 572 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 380 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07406 Mepo-Chr3 87492392 87498567 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07406 K01883 - gmx:100786700 969.148