Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07378 ATGGAACACATAGGTTCAAGCAAAGATGCTAACAACACCAACTACACAGAAATGGACATCGACCTCGACGACGATGACAACTCCGAAATCCTCAACGAACTCGGCGATGATATGGTCAGATACTTTTGCAAGAAAGCTTCCGTTATGTTCTTCGACCAATACGGTTTAATCAGTCACCAAATCAACTCGTACAATCAATTCATCAATTCGGGTCTTCAAAGCGCTTTCGATTCCTTCGGTGATCTCACTGTTACGCCTGGTTTTGATCCTTCTAAGAAAGGTGCTGATGAACATTACCGTTATGCTGCGGTTAAGTTTGGGAAGGTTACGCTTGAGCGACCTAAGTTTTGGTGTGGTGAAGGGAATGCTCAAGAGTTGAAGATGCTTCCCAGACATGCCAGGTTGCAGAGGATGACTTATGCTTCTAAGATGAAAGTTGATGTTCACATTCAGGTATATGTTATGAAGAAGGTTCGGAGTGATAAGTTTAAGACTGGGAAAGAAGAATACATTGATAAAGATATTAAATGGGAGGAGACAAGGGAAATAACTATTGGGAGACTGCCTGTTATGGTCAAGTCTGATCTGTGTTGGATGAGTGAAGCTGAGAAAGGTGACTGTGAATTTGACCACGGAGGCTACTTTCTGATTAAGGGTGCTGAGAAGATTTTTATCGCACAAGAGCAAATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCATACTGGGCTGTTGCTTTCAAGTCGCAGATGAAGAGAAACAGGATGGTTGTTAAACTGGTGGAAGGTTCGACGGAGGGAATTACAAACGGAGAGAAGCTGCTCACGGTGTATTTTCTGTCTGTCGAGATACCTGTATGGATATTGTTTTTTGCTCTTGGTGTCACATCAGATAAAGAAATTGTTGATCTCATCGATTATGGAGAGGCAGATGGAAGAATTGAAAACATTCTCTTTGCATCCATCCGTGAGGCAGACGATAAATGTGAAGCATTTCGCAGGGGAAAGAACGCTCTTCTTTTCTTAGAGGAACGTGTAAAAGGCGTACAGTTTCCACCCGCAGAATCTATTGACGAGTGCTTTAACATGTATGTTTTTCCGAACGTTAAAGGATTAAAAAGAAAGGCAAGGTATCTAGCATACATGGTGAAGGTTCTTCTACTAGCATATACTGGCCGCCGAAAAACTGATAACAGGGACGATTTTCGAAACAAGAGGCTTGAGTTGGCAGGTGAGCTGCTGGAGCGCGAGATTAAAGTGCACTTTGCACATGCTAGGAAGCGAATGGGGAAGGCTCTGCAGAGAGACCTTTATGGAGAACGAGAAGTTCGTCAAATTGAGCACTATCTTGACGCTTCCATTATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCTTGGACACATCCTTTCAAAAGGATGGAAAGGATTTCTGGTGTCGTTGCAACTCTTGGGCGAACCAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAGCAAGTTCAGTACACAGGGAAGGTCGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTTCTTTCCACCCCAGATGGTGAAAATTGTGGACTTGTAAAAAATTTGGCTGTCACAGGAGTAGTAAGTACCGATGTAACTGAATCCATACTTCCTCAGCTGTCCGATTGTGGGATGGAAGAACTTGTTGATGATACTACAACTGTTCTGGGGAAAAAAGACAAAGTCTTCCTAAATGGGGACTGGGTTGGAGTTTGTTCAGATTCCATATCATTTGTGGCAGAGCTACGAACTAGAAGACGGAGGAATGAGTTGCCTCATCAGGTGGAAATCAAAAGAGATCAGTGTCAACAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGTCCACTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGGATCTAAGTCTGAGCATAAATCTTTCCAGTCCCTATTGGATAATGGCGTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAGTATTTGTTTGGCAAAGAGGGAAAATCTTCTGTGAAGTACACACATTGTGAACTTGATATGTCATTCTTATTAGGTCTAAGCTGCTCACTTGTTCCATTTGCAAATCATGACCATGCTAGGAGAGTGTTGTACCAATCCCAGAAGCATTCTTCTCAGGCTATTGGCTTTGCTACGACAAACCCAAATATAAGAGTCGATGCTTTGTCTCACCAACTGTTTTATCCACAAAGACCACTCTTTCAGACAATGACATCTGATTGTCTTGGAAAACCTGGATATCTTGGTCAGAGTAAAGTTGTTCCAAAGTGTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTGCATCTCGGATATAATCAAGAAGATTCCTTGGTTATGAACCGTGCTTCGTTGCAGCGCGGCATGTTTAGATCTGAGCATATAAGGAGTTACAAAGCTGAAATTGAGAATAAGGAATCTTCAGAAAAGAGAAAGAAACCTGAAGACATTGTTAATTTTGGAAAGATACAGAGTAAAATTGGCCGAGTTGATAGCCTTGATGATGATGGCTTTCCATTTGTTGGAGCAAATTTGCAAAGTGGTGATATTATCATCGGGCGGTGTGCTGATTCCGGGACGGACCATAGTATAAAGCTAAAGCACACCGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCGTCGAATGATGAGGGGAAGAATTTTGCTGTTGTTTCGCTGAGACAGGTTAGGAGCCCAGTTCTTGGAGATAAGTTCTCTAGTATGCATGGACAGAAGGGTGTTTTAGGATTTCTGGAGTCTCAGGAAAATTTCCCCTTCACAAAACAAGGCATTGTTCCTGATATTGTTATAAATCCACATGCATTTCCCTCGCGACAAACTCCTGGACAACTACTCGAGGCTGCTTTGGGAAAGGGCATCGCTTGTGTTGGTTCACTGAGGAATGCTACTCCTTTCTCCACTTCCTCTGTTGAAGCCATTACTGACCAACTTCATAGAGCTGGCTTTTCAAGATGGGGGAACGAACGAGTATACAACGGAAGGACCGGCGAGATGGTCCGATCGCTAATATTTATGGGCCCAACATTCTACCAGCGACTGCACCACATGTCCGAAGACAAAGTCAAATTCAGGAACACTGGCCCAGTTCACCCGCTGACTAGACAGCCTGTCGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAGATGGAGCGTGATTGCCTGATAGCTCATGGTGCTTCAGCAAATTTGTATGAACGCCTCTTCACCCTGAGTGATTCATCTCAGATACACATTTGTAGTAAATGCAAGAATGTTGCAAATGTGATCTTGCGACCGGTATCTGGTGGCCGGAAGATTCGAGGTCCCTATTGCCGTTTCTGTGAATCAGCCGATGACATTGTGGTGGCTAGTGTTCCATATGGAGCCAAGTTATTGTCTCAGGAGCTGTTCAGCATGGGCATTAATCTCAAATTTGAAACTGAGCTTTGCTAG 3558 0.4342 MEHIGSSKDANNTNYTEMDIDLDDDDNSEILNELGDDMVRYFCKKASVMFFDQYGLISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYAAVKFGKVTLERPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFKTGKEEYIDKDIKWEETREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGSTEGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLIDYGEADGRIENILFASIREADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMYVFPNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGEREVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGKKDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKCEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07378 1185 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 47 1179 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mepo3g07378 1185 Gene3D - 713 1068 IPR037033 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 MobiDBLite consensus disorder prediction 1 20 - -
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 6 712 1082 IPR007120 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 4 581 641 IPR007646 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 Pfam RNA polymerase beta subunit 55 443 IPR007644 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 ProSitePatterns RNA polymerases beta chain signature. 935 947 IPR007121 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 FunFam DNA-directed RNA polymerase subunit beta 812 931 - -
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 2 267 408 IPR007642 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 5 657 703 IPR007647 GO:0006351
Mepo3g07378 1185 Gene3D RNA polymerase alpha subunit dimerisation domain 1069 1183 - -
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 3 485 544 IPR007645 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 Gene3D - 743 931 IPR014724 GO:0003899
Mepo3g07378 1185 FunFam DNA-directed RNA polymerase subunit beta 48 232 - -
Mepo3g07378 1185 Pfam RNA polymerase Rpb2, domain 7 1084 1182 IPR007641 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 39 1183 - -
Mepo3g07378 1185 Gene3D - 48 230 - -
Mepo3g07378 1185 Gene3D - 396 582 - -
Mepo3g07378 1185 FunFam DNA-directed RNA polymerase subunit beta 1069 1183 - -
Mepo3g07378 1185 CDD RNA_pol_B_RPB2 56 1181 IPR015712 GO:0003899|GO:0006351|GO:0032549
Mepo3g07378 1185 Gene3D RNA polymerase Rpb2, domain 2 241 395 IPR037034 GO:0003677|GO:0003899|GO:0006351
Mepo3g07378 1185 FunFam DNA-directed RNA polymerase subunit beta 396 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07378 Mepo-Chr3 87151089 87159206 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07378 K16252 - gmx:100815934 2003.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07378 3 87151089 87159206 Mepo3g07378 3 87151089 87159206 ECH