Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g07239 ATGATAGACCCCTATGGATTCGGGTGGATCACATGCACCCTCATCACCCTCGCTGCACTCTACAATTTCCTTTTCTCTCGTAAAAACCATTCCGATGCCGATGCAACAACCACCGAGAACATTACCACCGCTACCGGAGAATGCAGATCTTTTAACCCAAACGGCGACGTTGATATCATCGTTGTCGGTGCCGGTGTCGCCGGCTCTGCTCTCGCTTACACTCTTGGCAAGGATGGACGACGAGTACTTATTATTGAAAGAGATCTGAATGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGCTATCTCAAATTGATTGAGCTGGGGCTTGAAGATTGTGTGGAGAAAATTGATGCTCAACAAGTGTTTGGGTATGCTCTTTTCAAGGATGGGAAACACACGAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATCGCTGGAAGAAGCTTTCACAATGGGCGTTTTATTCAGAGAATGAGAGAGAAAGTTGCCTCCCTTCCCAATGTACGGTTGGAGCAAGGAACAGTCACTTCCCTACTCGAAGAGAATGGTACAATTAAAGGTGTACAGTACAAAACGAAAGATACTCAGGAATTTTCAGCATGTGCACCTCTTACCATTGTTTGTGATGGTTGTTTCTCAAACTTGCGCCGTTCTCTTTGCAATCCTAAGGTAGAGGTTCCCTCTTGTTTTGTTGGCTTAGTTTTAGAAAATTGTGAACTTCCATGTGCAAATCATGGTCACGTCATACTGGGAGATCCTTCACCGGTTCTGTTCTATCCGATAAGTAGTACAGAAATTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAAATATTTGAAGACAGTGGTAGCTCCACAGGTACCCCCTGAGCTTCATGCTGCTTTCGTAGCTGCAGTGGACAAAGGCCACATAAGGACAATGCCAAACCGAAGCATGCCAGCCGATCCTTATCCCACCCCGGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGCCATCCCCTAACCGGGGGTGGGATGACTGTAGCATTATCTGATATAGTAGTGCTGCGAAATCTTCTCAAGCCTTTACCTGACCTGAATGATGCACCTAACCTTTGTAAATACCTTGAATCCTTCTATACCTTGCGTAAGCCAGTGGCATCCACCATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTCTGTGCATCACCTGATCCAGCAAGGAAAGAAATGCGTCAAGCTTGCTTTGATTATCTGAGTCTTGGGGGTTTATTTTCAGAAGGACCAGTCTCTTTGCTTTCAGGATTAAACCCTCGCCCCCTGAGTTTGGTTCTTCATTTCTTCGCTGTTGCGATATATGGTGTTGGTCGTTTGTTGCTACCATTTCCTTCCCCTAAACGCATATGGATTGGAATACGATTAATCGCTAGTGCATCCGGAATCATCTTGCCCATTATTAAGGCAGAAGGAATCCGTCAAATGTTCTTCCCTGCAACTGTTCCAGCTTATTATAGAGCTCCTCCAGATGCATAA 1566 0.4553 MIDPYGFGWITCTLITLAALYNFLFSRKNHSDADATTTENITTATGECRSFNPNGDVDIIVVGAGVAGSALAYTLGKDGRRVLIIERDLNEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFIQRMREKVASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDTQEFSACAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELHAAFVAAVDKGHIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLPDLNDAPNLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGIRLIASASGIILPIIKAEGIRQMFFPATVPAYYRAPPDA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g07239 521 SUPERFAMILY FAD/NAD(P)-binding domain 56 432 IPR036188 -
Mepo3g07239 521 PANTHER SQUALENE MONOOXYGENASE 18 519 IPR040125 GO:0004506|GO:0016126
Mepo3g07239 521 Gene3D - 50 424 IPR036188 -
Mepo3g07239 521 FunFam Squalene monooxygenase 2 51 431 - -
Mepo3g07239 521 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 58 80 - -
Mepo3g07239 521 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 350 - -
Mepo3g07239 521 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 350 366 - -
Mepo3g07239 521 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 207 222 - -
Mepo3g07239 521 Pfam Squalene epoxidase 208 480 IPR013698 GO:0004506|GO:0016020|GO:0050660
Mepo3g07239 521 Pfam NAD(P)-binding Rossmann-like domain 61 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g07239 Mepo-Chr3 86039717 86043948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g07239 17 519 Miscellaneous Gene Families AT1G58440 76.482 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g07239 K00511 - gmx:100820031 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g07239 3 86039717 86043948 Mepo3g07239 3 86039717 86043948 ECH
Mepo4g00373 4 5611353 5615608 Mepo3g07239 3 86039717 86043948 PCT