Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06834 ATGGAATCAGAGAAAACAACCCTTATGATCCTTGGATCATACACAAAACCATCATGCTCAATCCTATTTCTCTTCTTCACCTTCCTCACCATCCTCTCCCTTCAATTCTCCACCCGCTCTCTCTTCCCTCTTTCCATTCTCCTCTCCCAACAACCATCCCTTTTGGATCCCACCACCTGCTCCGTTTTCTTCCACAACGTCCCTCCCAGAAAAATTATCAAGTCTATCGTTGATTTCGGCGGAGTTGGCGATGGCAAAACCTCTAACACCCAATCGTTTCAGAGAGCTATTCGTTACATGCAACGTTTTCAAGGCAAAGGTGGCTCCCAGCTTAATATTCCCAATGGGACATGGCTCACCGGTAGTTTTAATCTCACCAGTGATTTCACACTTTTTCTTCATCATGGTGCTGTTCTTTTAGGTTCTCAGGACATTAAAGAATGGCCTATTATTGAACCATTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGTGGAAGACATATTAGCCTTATTCATGCAAATGGGGTCCGTAATGTTGTCATTACAGGAGAAAATGGAACAGTGGATGGTCAAGGGAGGATGTGGTGGGAACTTTGGTGGAACAGAACATTAGTGCACACAAGAGGCCACCTCCTCGAACTCATGAACTCAGAAAATGTTCTTGTTTCAAACCTCACTTTCAGAAATTCTCCGTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCGAGTAACAACGTGTGCATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAAAGTGGTTGGGATCAATACGGAATCGCCGTGGCTAAGCCTAGCACAAATATCATAGTAAGGAGAGTTTCAGGAACTACCCCAACTTGCTCTGGAGTAGGAATAGGCAGTGAGATGTCTGGTGGAATTTCAAATATTACAATTGAGAATTTGCACGTGTGGAATTCTGCAGCAGGTGTTCGCATAAAATCTGATAATGGTAGAGGCGGGTATGTAACAAATGTGAGTATAAGCAATATAAGAATGGAGAGAGTGAAGATACCAATTAGGTTTAGCAGAGGTTCAAACGATCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTTAAAGATATTTTAATCAGCAATGTGGTCAGTGTAAATTCAACAAAAGCTCCAGTTTTGGAAGGTGTGAAGGGTTCATCGTTTGAAGGCTTGTGCTTCAAGAATGTTACTCTTCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATACATAGCTGGTTTCACCAATGGGGTGTCCCCCGTTCCATGTCCTGAGTTGCACAACAATGGCACTACATCCTGGTGTTGA 1422 0.4332 MESEKTTLMILGSYTKPSCSILFLFFTFLTILSLQFSTRSLFPLSILLSQQPSLLDPTTCSVFFHNVPPRKIIKSIVDFGGVGDGKTSNTQSFQRAIRYMQRFQGKGGSQLNIPNGTWLTGSFNLTSDFTLFLHHGAVLLGSQDIKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGRMWWELWWNRTLVHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSNNVCIEDNYIESGDDLVAIKSGWDQYGIAVAKPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIENLHVWNSAAGVRIKSDNGRGGYVTNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKAPVLEGVKGSSFEGLCFKNVTLLGVALSATWHCEYIAGFTNGVSPVPCPELHNNGTTSWC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06834 473 PANTHER PECTIN LYASE-RELATED 34 470 - -
Mepo3g06834 473 Gene3D - 64 452 IPR012334 -
Mepo3g06834 473 SMART pbh1 302 324 IPR006626 -
Mepo3g06834 473 SMART pbh1 330 351 IPR006626 -
Mepo3g06834 473 SMART pbh1 241 267 IPR006626 -
Mepo3g06834 473 SMART pbh1 359 380 IPR006626 -
Mepo3g06834 473 SMART pbh1 268 300 IPR006626 -
Mepo3g06834 473 SUPERFAMILY Pectin lyase-like 64 465 IPR011050 -
Mepo3g06834 473 Pfam Glycosyl hydrolases family 28 170 450 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06834 Mepo-Chr3 82086562 82089054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06834 1 473 Glycoside Hydrolase AT4G33440 67.158 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06834 - - gmx:100814190 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06834 3 82086562 82089054 Mepo3g06834 3 82086562 82089054 ECH