Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06543 ATGGGCTGCTTTTGTTCAACTTCAAAGAATGTTAAAACACCACCAGGCTATGAGGATCCTACAGTTCTTGCTTCTGAAACACCCTGTGAGTATCCATCTTCATCATTAACCGTTACTGTGAGTGAAGTAGAAGCGTTATATGAACTCTTTTTGAAGTTAAGCAATTCAATTATTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTAGCACTCTTCAGGAATGAGAATGAGAAAAATCTGTTTGCAGACAGAATTTTTGACTTATTTGATGTCAAGCGCAACGGTGTTATTGAATTTGGTGAATTCGTTCGATCTCTTGGTGTTTTTCATCCAAATGCGGCTTTAGAAGACAAAATTGCATTTGCTTTTAGGTTGTATGATCTGAGGCAAACAGGGTACATTGAAAGAGAAGAGTTAAAGGAAATGGTATTGGCACTTCTACATGAATCAGATCTTGAGCTTTCAGAAGACATGATAGAGTCTATTGTGGATAAGACTTTTAAAGATGCTGATACAAAAGATGATGGAAGGATTGATCAAGATGAGTGGAAAGCTTTTGTCTCTCAACATCCATCTTTGATAAAGAACATGACCCTTCCATATCTAAAGGATATTACCTTAGCATTTCCCAGTTTTATTGCAAGAACAGAAGTTGAAGACTCATAG 669 0.3677 MGCFCSTSKNVKTPPGYEDPTVLASETPCEYPSSSLTVTVSEVEALYELFLKLSNSIIEDGLIHKEEFQLALFRNENEKNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAALEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLELSEDMIESIVDKTFKDADTKDDGRIDQDEWKAFVSQHPSLIKNMTLPYLKDITLAFPSFIARTEVEDS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06543 222 Pfam EF-hand domain pair 118 187 IPR002048 GO:0005509
Mepo3g06543 222 CDD EFh 119 189 IPR002048 GO:0005509
Mepo3g06543 222 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Mepo3g06543 222 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Mepo3g06543 222 PANTHER CALCINEURIN B 2 221 IPR045198 GO:0005509|GO:0019722|GO:0019900
Mepo3g06543 222 PRINTS Recoverin family signature 133 151 - -
Mepo3g06543 222 PRINTS Recoverin family signature 179 199 - -
Mepo3g06543 222 PRINTS Recoverin family signature 86 107 - -
Mepo3g06543 222 Gene3D - 33 222 - -
Mepo3g06543 222 SMART efh_1 82 110 IPR002048 GO:0005509
Mepo3g06543 222 SMART efh_1 119 147 IPR002048 GO:0005509
Mepo3g06543 222 SMART efh_1 163 191 IPR002048 GO:0005509
Mepo3g06543 222 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Mepo3g06543 222 FunFam calcineurin B-like protein 3 29 221 - -
Mepo3g06543 222 SUPERFAMILY EF-hand 36 212 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06543 Mepo-Chr3 79407438 79409837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06543 38 221 EF-hand Containing Proteins AT5G24270 77.717 5.19e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06543 K06268 - gmx:100811649 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06543 3 79407438 79409837 Mepo3g06543 3 79407438 79409837 ECH