Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06478 ATGAGTCGTCGAGGAATGGATCGTGACGATGAAGACGACGAGGAGTATGAGGAACAGGTTGAAGATTTCGACGAAGAGGAAGCTGAGGAGGAAGAGGAGAGAGGTGGTGGCGGTGGAAAGAAGCGGAGGAGGCCGAGTTTTATCGATGATGATGCGGAGGAGGTAGATGAAGATGAGGAGGAGGAGGACGAAGAGGATTATGATGATGATGATTACGACGGCGGCGGCAAAGGCAGTAGCCGTAAGCGGCAGTATAGGAAGGTTTCCGCTTCAAATTTCTTTGATGAAGAGGCTGCTGTTGATTCGGATGAGGAGGAGGAGGAAGAAGAAGTCGAAGACGGCTTCATTGTTGGGCCTGATGTGCAAGACGAAGATGATAATAGAGGAAGGCCACGCCACAGACAGCCACCCCACCAAGAAGATCATGAAGACCTTGAAGAGATGGCAAGAAGGATACAAGAGAGATATGGAAAGCAGCGGTTGGCAGAATATGATGAAGAAACTACAGATGTAGAACAGCAAGCACTTTTGCCATCTGTGAGAGACCCAAAGCTGTGGATGGTCAAATGTGCGATTGGCCGTGAGCGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCAGAATTGCAAATCAGATCAGCTATTGCTCTTGATCATCTCAAAAACTACATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGCAATATATTTGGACAAAAAATAACACTCGTTCCAATAAGAGAAATGACTGACGTGCTGTCAGTTGAAAGCAAAGCCATTGATCTTGCTAGAGATACTTGGGTTAGAATGAAGATTGGGACATACAAGGGGGACCTTGCCAAAGTAGTGGATGTTGATAATGTACGGCAGAGGGTTACTGTGAAACTAATTCCGAGGATAGACTTACAGGCTCTCGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTTGTCCCCCCTCCTCGTTTTATGAATGTTGAAGAAGCTAGGGAACTGCATATCCGTGTTGAGCATAGGCGTGATGCCACCTACGGGGAACGGTTTGATTCCATTGGAGGCATGATGTTCAAAGATGGATTCTTATACAAAAGTGTATCTATAAAATCCCTTTATTCCCAGAACATCAAACCTACGTTTGACGAGCTCGAAAAATTTCGTAAACCGGGTGAAACTGGAGATGTAGCCAGTCTGTCAACTCTGTTTGCGAACAGAAAGAAAGGGCATTTCATGAAAGGTGATGCTGTTATTGTCATCAAGGGAGATTTGAAGAACTTAAAGGGATGGGTGGAGAAAGTTGACGAGGATAATGTTCATATTAGACCAGAAATGAAGGATTTACCTAAAACTCTTGCACTAAATGAAAAGGAACTTTGTAAATATTTTGAACCCGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCTACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATTTTAATATCTGATACCACAAAGGAGCATATCCGTGCGTTTGCAGATGATGTTGTAGAGAGTTCTGAAGTAACCACCGGTGTGACTAAAATTGGGGACTATGAACTTCGTGATCTTGTTTTGCTAGATAATTCGAGTTTTGGTGTCATAATCCGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTACTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAGTGTAAGCTAGAGAAGAAAATAAATGTGCAGGATAAGTTTAGGAATACAGTATCATCAAAAGATGTTGTGCGGATTCTTGAAGGTCCCTGCAAAGGCAAACAAGGTTCTGTGGAGCACATATATAGAGGGGTCTTGTTCGTCTTCGATCGTCATCATCTTGAACATGCAGGCTTTATATGTGTTAAGGCCCAATCATGTGTAGTTGTGGGAGGTTCACGCTCCAATGGTGACAGAAATGGTGATGTACACTCGAGATTCCCCGGTCTTAGAACTCCACCTCGCATTCCACAGTCCCCACGTAGGTTTTCTCGAGGAGGGCCTCCATCTGCTGGAGGTAGACATAATAGGGGTGGAAGGGGGCATGATGGTTTGACAGGTGCAACTGTTAAAGTACGACAGGGTTCCTATAAAGGTTATCGTGGACGTGTTATAGAAGTTAAAGGATCATTCGTTCGGGTTGAATTGGAATCCCAAATGAAGGTTGTAACCGTTGACCGCAATCATATATCTGACAATGTGGCTGTTACCCCACAACGTGAAACATCATCCCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCTTTGCACCCGTATATGACTCCGATGAGAGATGCAGGAGCAACTCCAATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCTTGGAATCCTTATGCGCCAATGAGTCCTCCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGGGCCAGTCCACAGTATCAGCCAGGAAGCCCTCCTTCCCGGCCATATGAAGCACCAACTCCTGGTGCTGGTTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCCGGAACACCACGGGACAGTTCTGCCTACGCGAATGCTCCAAGCCCATATTTACCATCAACACCAGGGCAGCCTATGACACCAAATTCTGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATCATGTCCCCAGTATTGGGTGGGGACAATGAAGGGCCTTGGTTTATGCCAGACATATTGGTCAATGTACACAGGTCCGGAGAGGAGTCTGTTGGAGTTATAAAAGAAGTTCTCCCGGATGGTTCTTATAGGGTAGCCCTTGGGTCTAACGGAAATGGTGAAACAATATCGGCCCTTTCCAATGAAGTGGAGGCTGTAGTGCCAAGAAAATCTGATAAAATAAAGATAATGGGAGGGACGTTGCGTGGTTCCACTGGCAAGTTGATTGGTGTGGATGGCACTGATGGCATAGTAAAAGTAGACGACACGTTGGATGTGAAGATTTTAGACTTGGTTATTCTGGCAAAATTAGCTCAACCATGA 3117 0.4562 MSRRGMDRDDEDDEEYEEQVEDFDEEEAEEEEERGGGGGKKRRRPSFIDDDAEEVDEDEEEEDEEDYDDDDYDGGGKGSSRKRQYRKVSASNFFDEEAAVDSDEEEEEEEVEDGFIVGPDVQDEDDNRGRPRHRQPPHQEDHEDLEEMARRIQERYGKQRLAEYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVEEARELHIRVEHRRDATYGERFDSIGGMMFKDGFLYKSVSIKSLYSQNIKPTFDELEKFRKPGETGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEMKDLPKTLALNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRAFADDVVESSEVTTGVTKIGDYELRDLVLLDNSSFGVIIRVESEAFQVLKGVTDRPEVVLVKLREIKCKLEKKINVQDKFRNTVSSKDVVRILEGPCKGKQGSVEHIYRGVLFVFDRHHLEHAGFICVKAQSCVVVGGSRSNGDRNGDVHSRFPGLRTPPRIPQSPRRFSRGGPPSAGGRHNRGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGSFVRVELESQMKVVTVDRNHISDNVAVTPQRETSSRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGQPMTPNSASYLPGTPGGQPMTPGTGGLDIMSPVLGGDNEGPWFMPDILVNVHRSGEESVGVIKEVLPDGSYRVALGSNGNGETISALSNEVEAVVPRKSDKIKIMGGTLRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 760 783 - -
Mepo3g06478 1038 CDD KOW_Spt5_4 603 645 IPR041977 -
Mepo3g06478 1038 ProSitePatterns Ribosomal protein L24 signature. 427 444 IPR005825 GO:0003735|GO:0005840|GO:0006412
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 10 32 - -
Mepo3g06478 1038 FunFam Transcription elongation factor SPT5 164 266 - -
Mepo3g06478 1038 Pfam Early transcription elongation factor of RNA pol II, NGN section 184 265 IPR005100 -
Mepo3g06478 1038 Pfam Spt5 transcription elongation factor, acidic N-terminal 93 178 IPR022581 -
Mepo3g06478 1038 SMART kow_9 273 300 IPR005824 -
Mepo3g06478 1038 SMART kow_9 985 1012 IPR005824 -
Mepo3g06478 1038 SMART kow_9 599 626 IPR005824 -
Mepo3g06478 1038 SMART kow_9 705 732 IPR005824 -
Mepo3g06478 1038 SMART kow_9 423 450 IPR005824 -
Mepo3g06478 1038 SMART kow_9 475 502 IPR005824 -
Mepo3g06478 1038 SMART nusgn_4 182 268 IPR006645 GO:0140673
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 97 120 - -
Mepo3g06478 1038 Coils Coil 6 33 - -
Mepo3g06478 1038 Gene3D - 273 315 IPR014722 -
Mepo3g06478 1038 CDD NGN_Euk 184 266 IPR039385 -
Mepo3g06478 1038 PIRSF Spt5 2 1038 IPR017071 GO:0006357|GO:0032784
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 797 923 - -
Mepo3g06478 1038 Gene3D - 418 475 IPR014722 -
Mepo3g06478 1038 Pfam KOW motif 478 503 IPR005824 -
Mepo3g06478 1038 SUPERFAMILY Translation proteins SH3-like domain 416 454 IPR008991 -
Mepo3g06478 1038 FunFam Transcription elongation factor SPT5 691 755 - -
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 33 50 - -
Mepo3g06478 1038 Gene3D - 478 527 IPR014722 -
Mepo3g06478 1038 Gene3D - 689 755 IPR014722 -
Mepo3g06478 1038 PANTHER SUPPRESSOR OF TY 5 72 1015 IPR039659 GO:0006357|GO:0032784
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 1 145 - -
Mepo3g06478 1038 CDD KOW_Spt5_3 475 525 IPR041976 -
Mepo3g06478 1038 CDD KOW_Spt5_5 705 753 IPR041978 -
Mepo3g06478 1038 CDD KOW_Spt5_2 424 474 IPR041975 -
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 51 72 - -
Mepo3g06478 1038 SUPERFAMILY Translation proteins SH3-like domain 468 526 IPR008991 -
Mepo3g06478 1038 CDD KOW_Spt5_1 277 314 IPR041973 -
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 655 709 - -
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 121 145 - -
Mepo3g06478 1038 CDD KOW_Spt5_6 979 1036 IPR041980 -
Mepo3g06478 1038 Gene3D - 164 266 IPR036735 GO:0006355
Mepo3g06478 1038 FunFam Transcription elongation factor SPT5 418 475 - -
Mepo3g06478 1038 MobiDBLite consensus disorder prediction 863 884 - -
Mepo3g06478 1038 FunFam Transcription elongation factor SPT5 273 315 - -
Mepo3g06478 1038 FunFam Transcription elongation factor SPT5 478 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06478 Mepo-Chr3 78743109 78750553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06478 K15172 - gmx:100801380 1691.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06478 3 78743109 78750553 Mepo3g06478 3 78743109 78750553 ECH