Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06476 ATGCAACACGTAAAAAAAATTGGTGGAATCAGAAAGAGTTTCAATCCATCAAATTGGTCTCATTCAATAAGGAACAACAGTACGAACCAATCATCATTGAAAAGGGCTCTTGTTTTGTACAAACAAACTCGCCATGAAACACCACACGACCCTACCGTGATCCCTCAGTTACTCAAAGCATGCGATTCTCACCCCTTCCTTCGTTACGTTAAATCCTTACACGCAGAATCCATCAAAGATGGTTCTGATGTCGATGTGTTCATCGGAACCGCCATTGTTGCAGCGTATGCAAAATGTGGTGTTGTTTGGGATGCACGCAAGGTGTTTGATTTTATGCCTGAAAGAAATGTTGTGACTTGGAATGCAATGATTGGTGGGTATTTGAGAAATGGTGACGCTGAATCTGCGTTACTTGCGTTTGAAGCTATGCCGGGGAAAACGAGGGTGAGTTGGAGTCAGATGATTGGCGGATTTGCTAGGAATGGGGATACTGTAACTGCAAGGAAGTTTTTTGATAAGGTTCCGTATGAGTTGAAGGATGTGGTGATATGGACTGTGATGGTTGATGGGTATGCTAAGAAAGGGGAAATGGAAGATGCAAGAGAGGTTTTTGAGTTAATGCCTGAAAGGAATTATTTTGTTTGGTCATCTATGGTTTGTGGGTACTGCAAGAAGGGTGATGTTATGGAGGCTGAGGCGATTTTTCGACGGATTCCGGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGGTATGTACAGAATGGATTTGGTGAGAAAGCATTGGAGGCTTTTGGGGAAATGGGAGTTGATGGGTTTGAGCCGGATGAATTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTTGGGGACTTGGATGCTGGAAAACAGATACATCACATGATAGAATGTAAAGGAATAGCTGTGAACCAGTTTGTTTTGAGTGGATTGATTGACATGTATGCAAAATGTGGGGACTTGGTTAATGCAAGGTTGGTATTTGAAAGTTGTAATGAAAGGAATGTTTTCTGCTGGAATGCTATGATTGCGGGTTTTGCCGTCAATGGACAATGCAATGAGGTTCTTGAGTATTTGGGTAGGATGGAGGAGTCAAATATAAGGCCTGATGCTGTCTCATTTATTACTGTGCTCTCAGCTTGTGCTCATGGAGGTTTGGTGAGTGAAGCATTGGAAGTAATATCTAAAATGGAGGAATATGGAATTGAAATGGGCATCAGGCATTATGGATGCATGGTTGACCTCTTGGGAAGAGCAGGGATGTTAAAGGAGGCATATGATTTAATAAAAAGAATGCCAATGAAACCTAATGAAACAGTTTTGGGGGCAATGATAGGTTCTTGCTGGATTCATTCAGATATGAAAATGGCAGAACAAGTAATGAAGATGACCGGTGCAAACTCTGCTGCATGTGTTAATTCCAACAATGTGCTTCTGTCAAATATCTACGCAGCTTCAGAAAAATGGGAGAAAGCTGAAATGATAAGGAGTAGCATGGTTGATGGAGGATCTGAAAAGATACCAGGGTGCAGTTCAATCATCCTTAGTAACTCTGCTATTGATTTAAGTACAAGTAAAGAAGTTTCACGTCAAATGAATGGGCTAAGTGCAATCTAA 1641 0.4144 MQHVKKIGGIRKSFNPSNWSHSIRNNSTNQSSLKRALVLYKQTRHETPHDPTVIPQLLKACDSHPFLRYVKSLHAESIKDGSDVDVFIGTAIVAAYAKCGVVWDARKVFDFMPERNVVTWNAMIGGYLRNGDAESALLAFEAMPGKTRVSWSQMIGGFARNGDTVTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGFGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQIHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLGRMEESNIRPDAVSFITVLSACAHGGLVSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGMLKEAYDLIKRMPMKPNETVLGAMIGSCWIHSDMKMAEQVMKMTGANSAACVNSNNVLLSNIYAASEKWEKAEMIRSSMVDGGSEKIPGCSSIILSNSAIDLSTSKEVSRQMNGLSAI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06476 546 Gene3D Tetratricopeptide repeat domain 313 534 IPR011990 GO:0005515
Mepo3g06476 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Mepo3g06476 546 FunFam Pentatricopeptide repeat-containing protein 316 524 - -
Mepo3g06476 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Mepo3g06476 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Mepo3g06476 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 149 173 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 214 241 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 118 144 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 182 211 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 416 441 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat 90 117 IPR002885 -
Mepo3g06476 546 SUPERFAMILY TPR-like 18 237 IPR011990 GO:0005515
Mepo3g06476 546 Pfam E motif 481 521 IPR046848 -
Mepo3g06476 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Mepo3g06476 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 179 243 IPR046960 GO:0003723|GO:0009451
Mepo3g06476 546 MobiDBLite consensus disorder prediction 13 28 - -
Mepo3g06476 546 Pfam PPR repeat family 243 289 IPR002885 -
Mepo3g06476 546 Pfam PPR repeat family 342 390 IPR002885 -
Mepo3g06476 546 MobiDBLite consensus disorder prediction 1 28 - -
Mepo3g06476 546 FunFam Pentatricopeptide repeat-containing protein chloroplastic 178 312 - -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 245 278 IPR002885 -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 214 242 IPR002885 -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 182 211 IPR002885 -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 380 412 IPR002885 -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 345 379 IPR002885 -
Mepo3g06476 546 NCBIfam pentatricopeptide repeat 118 143 IPR002885 -
Mepo3g06476 546 Gene3D Tetratricopeptide repeat domain 147 210 IPR011990 GO:0005515
Mepo3g06476 546 Gene3D Tetratricopeptide repeat domain 211 307 IPR011990 GO:0005515
Mepo3g06476 546 Gene3D Tetratricopeptide repeat domain 21 146 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06476 Mepo-Chr3 78727587 78729480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06476 50 521 Glycoside Hydrolase AT3G49170 31.697 2.74e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06476 - - mtr:11417411 993.801